CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES16537
OQU82814

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64060.1	EES16537	AT5G21326.1	23162070
AT1G64060.1	OQU82814	AT5G21326.1	23162070

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043543_P002	Maize	mitochondrion	98.52	98.62
Os01t0734466-01	Rice	peroxisome, plasma membrane	53.07	93.47
HORVU3Hr1G069780.1	Barley	mitochondrion	87.18	87.83
TraesCS3D01G279900.1	Wheat	mitochondrion	87.92	87.74
TraesCS3B01G314000.2	Wheat	mitochondrion	87.71	87.71
KXG22389	Sorghum	mitochondrion	87.08	85.89
TraesCS3A01G280200.1	Wheat	mitochondrion	87.61	84.73
GSMUA_Achr9P05450_001	Banana	mitochondrion	72.14	78.19
GSMUA_Achr6P31850_001	Banana	mitochondrion	72.03	76.23
VIT_02s0025g00510.t01	Wine grape	cytosol	72.88	72.96
KRH41250	Soybean	cytosol	72.67	72.9
KRH59983	Soybean	cytosol, nucleus, plasma membrane	72.35	72.58
KRH77593	Soybean	cytosol	69.81	71.09
KRH27880	Soybean	cytosol	69.6	70.87
Solyc08g081690.2.1	Tomato	cytosol	71.93	70.51
CDY08347	Canola	mitochondrion	70.13	70.13
AT1G64060.1	Thale cress	cytosol	69.92	69.92
PGSC0003DMT400032088	Potato	cytosol, nucleus, peroxisome	13.24	69.83
Bra027764.1-P	Field mustard	mitochondrion	70.13	69.83
CDY38202	Canola	mitochondrion	67.06	67.13
KXG32613	Sorghum	cytosol, plastid	46.72	53.33
KXG35704	Sorghum	mitochondrion	55.08	51.64
OQU87817	Sorghum	cytosol	46.61	51.52
OQU86843	Sorghum	cytosol	49.89	50.97
KXG25273	Sorghum	mitochondrion	53.5	50.1
EES16102	Sorghum	plastid	48.52	50.0
OQU83587	Sorghum	plastid	53.71	46.99
OQU92169	Sorghum	peroxisome, plastid	36.44	41.1
EES10867	Sorghum	plasma membrane	13.88	17.1

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	Gene3D:2.40.30.10	UniProt:C5XJ45	ncoils:Coil	InterPro:Cyt_b245_heavy_chain
EnsemblPlants:EES01429	ProteinID:EES01429	ProteinID:EES01429.2	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6	GO:GO:0003674	GO:GO:0003824
GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0050664	GO:GO:0055114
GO:GO:0098869	InterPro:IPR002048	InterPro:IPR017927	InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022
PFAM:PF08030	PFAM:PF08414	PRINTS:PR00466	ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384
PANTHER:PTHR11972	PANTHER:PTHR11972:SF66	InterPro:Riboflavin_synthase-like_b-brl	EnsemblPlantsGene:SORBI_3003G287400	SUPFAM:SSF47473	SUPFAM:SSF52343
SUPFAM:SSF63380	TMHMM:TMhelix	UniParc:UPI00081AC663	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:62053854..62061425

Molecular Weight (calculated)

106574.0 Da

IEP (calculated)

9.595

GRAVY (calculated)

-0.258

Length

944 amino acids

Sequence
(BLAST)

001: MRGGAAPGHQ RWSGSAGTTP RSLSTGSSPR GSERSSDDGE ELVEVTLDLQ EDDTIILRSV EPAAAGAANG LPLGARGDHA GGASSSSRSR SPSIRRTSSH
101: RLLQFSQELK AEAMSIARQF SQDLTKRFGR TQSRAEGQGQ QQQQPSSGIE SALAARAARR QRAQLDRTRS GAHKALRGLR FISSNKANNA WMEVQANFDR
201: LACDGFLSRS DFAECIGMTE SKEFALELFD TLSRRRQMQV DKINKEELRE IWQQITDNSF DSRLQIFFDM VDKNADGRIG EEEVKEIIML SASANKLSRL
301: KEQAEEYAAL IMEELDPEGL GYIELWQLET LLLQKDTYMN YSQALSYTSQ ALSQNLAGLR KKSPIRKIST TLSYYLEDNW KRLWVLALWI GIMAGLFTWK
401: FMQYRNRYVF NVMGYCVTTA KGAAETLKLN MAIILLPVCR NTITWLRNTR AARALPFDDN INFHKTIAAA IVVGIILHAG NHLVCDFPRL INSSNEKYAP
501: LGQYFGETKP TYFRLVKGVE GITGVIMVIC MIIAFTLATR WFRRSLVKLP KPFDKLTGFN AFWYSHHLFI IVYLALVVHG QFLYLIHDWY RKTTWMYLAV
601: PVCLYAGERV LRFFRSGSYS VRLLKVAIYP GNVLTLQMSK PPAFRYKSGQ YMFVQCPAVS PFEWHPFSIT SAPGDDYLSI HVRQLGDWTR ELKRVFAAAC
701: EPPVGGKSGL LRADETTKKA LPKLLIDGPY GSPAQDYSKY DVLLLVGLGI GATPFISILK DLLNNIIRME EEEDASTDLY PPVGPNKPHI DLSTLMTVTS
801: RPKRVLRTTN AYFYWVTREQ GSFDWFKGVM NEIAELDQRN IIEMHNYLTS VYEEGDARSA LITMLQALNH AKNGVDIVSG TKVRTHFARP NWKKVLSKIA
901: SKHPHAKIGV FYCGAPVLAQ ELNKLCHEFN GKSTTKFEFH KEHF

Best Arabidopsis Sequence Match ( AT1G64060.1 )
(BLAST)

001: MKPFSKNDRR RWSFDSVSAG KTAVGSASTS PGTEYSINGD QEFVEVTIDL QDDDTIVLRS VEPATAINVI GDISDDNTGI MTPVSISRSP TMKRTSSNRF
101: RQFSQELKAE AVAKAKQLSQ ELKRFSWSRS FSGNLTTTST AANQSGGAGG GLVNSALEAR ALRKQRAQLD RTRSSAQRAL RGLRFISNKQ KNVDGWNDVQ
201: SNFEKFEKNG YIYRSDFAQC IGMKDSKEFA LELFDALSRR RRLKVEKINH DELYEYWSQI NDESFDSRLQ IFFDIVDKNE DGRITEEEVK EIIMLSASAN
301: KLSRLKEQAE EYAALIMEEL DPERLGYIEL WQLETLLLQK DTYLNYSQAL SYTSQALSQN LQGLRGKSRI HRMSSDFVYI MQENWKRIWV LSLWIMIMIG
401: LFLWKFFQYK QKDAFHVMGY CLLTAKGAAE TLKFNMALIL FPVCRNTITW LRSTRLSYFV PFDDNINFHK TIAGAIVVAV ILHIGDHLAC DFPRIVRATE
501: YDYNRYLFHY FQTKQPTYFD LVKGPEGITG ILMVILMIIS FTLATRWFRR NLVKLPKPFD RLTGFNAFWY SHHLFVIVYI LLILHGIFLY FAKPWYVRTT
601: WMYLAVPVLL YGGERTLRYF RSGSYSVRLL KVAIYPGNVL TLQMSKPTQF RYKSGQYMFV QCPAVSPFEW HPFSITSAPE DDYISIHIRQ LGDWTQELKR
701: VFSEVCEPPV GGKSGLLRAD ETTKKSLPKL LIDGPYGAPA QDYRKYDVLL LVGLGIGATP FISILKDLLN NIVKMEEHAD SISDFSRSSE YSTGSNGDTP
801: RRKRILKTTN AYFYWVTREQ GSFDWFKGVM NEVAELDQRG VIEMHNYLTS VYEEGDARSA LITMVQALNH AKNGVDIVSG TRVRTHFARP NWKKVLTKLS
901: SKHCNARIGV FYCGVPVLGK ELSKLCNTFN QKGSTKFEFH KEHF

Arabidopsis Description

RBOHFRespiratory burst oxidase homolog protein F [Source:UniProtKB/Swiss-Prot;Acc:O48538]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.