CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 4
cytosol 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES16537
OQU82814

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64060.1	EES16537	AT5G21326.1	23162070
AT1G64060.1	OQU82814	AT5G21326.1	23162070

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038762_P001	Maize	plastid	97.39	98.31
Os05t0528000-01	Rice	mitochondrion	89.86	90.43
TraesCS1A01G347700.1	Wheat	mitochondrion	87.46	87.1
EES01429	Sorghum	mitochondrion	85.89	87.08
TraesCS1D01G350600.1	Wheat	mitochondrion	87.57	86.57
TraesCS1B01G362200.1	Wheat	mitochondrion	87.67	86.32
HORVU1Hr1G081950.8	Barley	plastid	80.25	79.01
GSMUA_Achr9P05450_001	Banana	mitochondrion	70.11	77.04
GSMUA_Achr6P31850_001	Banana	mitochondrion	70.32	75.45
VIT_02s0025g00510.t01	Wine grape	cytosol	71.68	72.75
PGSC0003DMT400032088	Potato	cytosol, nucleus, peroxisome	13.48	72.07
KRH41250	Soybean	cytosol	69.91	71.09
KRH59983	Soybean	cytosol, nucleus, plasma membrane	69.91	71.09
KRH77593	Soybean	cytosol	68.23	70.44
KRH27880	Soybean	cytosol	67.92	70.12
CDY08347	Canola	mitochondrion	68.55	69.49
Solyc08g081690.2.1	Tomato	cytosol	69.8	69.37
Bra027764.1-P	Field mustard	mitochondrion	68.65	69.3
AT1G64060.1	Thale cress	cytosol	68.34	69.28
CDY38202	Canola	mitochondrion	65.62	66.6
KXG32613	Sorghum	cytosol, plastid	46.19	53.45
OQU87817	Sorghum	cytosol	46.08	51.64
OQU86843	Sorghum	cytosol	49.63	51.41
KXG35704	Sorghum	mitochondrion	53.4	50.74
EES16102	Sorghum	plastid	47.86	50.0
KXG25273	Sorghum	mitochondrion	51.93	49.31
OQU83587	Sorghum	plastid	52.56	46.62
OQU92169	Sorghum	peroxisome, plastid	35.21	40.26
EES10867	Sorghum	plasma membrane	14.0	17.49

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	Gene3D:2.40.30.10	UniProt:A0A1B6P9G9	ncoils:Coil	InterPro:Cyt_b245_heavy_chain
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom
InterPro:Fe_red_NAD-bd_6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0050664	GO:GO:0055114	GO:GO:0098869	InterPro:IPR002048	InterPro:IPR017927
EnsemblPlants:KXG22389	ProteinID:KXG22389	ProteinID:KXG22389.1	InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022
PFAM:PF08030	PFAM:PF08414	PRINTS:PR00466	ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384
PANTHER:PTHR11972	PANTHER:PTHR11972:SF66	InterPro:Riboflavin_synthase-like_b-brl	EnsemblPlantsGene:SORBI_3009G206500	SUPFAM:SSF47473	SUPFAM:SSF52343
SUPFAM:SSF63380	TMHMM:TMhelix	UniParc:UPI0003C6A5FA	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:-:55438002..55447812

Molecular Weight (calculated)

107466.0 Da

IEP (calculated)

9.810

GRAVY (calculated)

-0.243

Length

957 amino acids

Sequence
(BLAST)

001: MRGGGGGGPG VGTPGRPRWG SGATTPRSLS TGSSPRGSDR SSDDGEELVE VTLDLLEDDN IVLRSVEPAA AGSAAVAAPP RRHPDPTPSS SGAPSRSRSP
101: AMRRTSSHRL LQFSQELKAT ANRAKQFSQD LTKRFTRTQS RANLADPPPA TATAAAPSSG IDAALEARAQ RRRRAQLDRT KSGAQRAIRG LRFISGGNKA
201: SNAWIEVQAN FDRLARDGYL SRADFPKCIG MTESQEFAME LFDTLSRRRQ MQVDKINKDE LREIWQQITD NSFDSRLQIF FDMVDKNADG HITEAEVKEI
301: IMLSASANKL SRLKEQAEEY AALIMEELDP EGLGYIELWQ LETLLLQKDT YVNYSQALSY TSQALSQNLA GLRKRSPIRK ISSTVNYYLE DNWKRLWVLA
401: VWIGIMAGLF IWKFIQYRNR YVFDVMGYCV TTAKGAAETL KLNMALILLP VCRNTITWLR NTKAARALPF DDNINFHKTI AAAIVVGVVL HAGNHLVCDF
501: PRLIGSSEMK YAPLRKYFGE NKPTYLALVK GVEGITGVIM VVCMLIAFTL ATRWFRRSLV KLPRPFDKLT GFNAFWYSHH LFIIVYIALV IHGECLYLIH
601: DWYKKTTWMY LAVPVGLYVG ERTLRFFRSG SYSVRLLKVA IYPGNVLTLQ MSKPPAFRYK SGQYMFVQCP AVSPFEWHPF SITSAPGDDY LSIHVRQLGD
701: WTRELKRVFS AACEPPVGGK SGLLRADETT KKALPKLLID GPYGSPAQDY SKYDVLLLVG LGIGATPFIS ILKDLLNNII KMEEEEEASS DLYPPIGRSK
801: AHVDLDTLMR ITSKPKRVLK TTNAYFYWVT REQGSFDWFK GVMNEIAELD QRNIIEMHNY LTSVYEEGDA RSALITMLQA LNHAKNGVDI VSGTKVRTHF
901: ARPNFKKVLS KIATKHPYAK IGVFYCGAPV LAQELSKLCY EFNGKSTTKF EFHKEHF

Best Arabidopsis Sequence Match ( AT1G64060.1 )
(BLAST)

001: MKPFSKNDRR RWSFDSVSAG KTAVGSASTS PGTEYSINGD QEFVEVTIDL QDDDTIVLRS VEPATAINVI GDISDDNTGI MTPVSISRSP TMKRTSSNRF
101: RQFSQELKAE AVAKAKQLSQ ELKRFSWSRS FSGNLTTTST AANQSGGAGG GLVNSALEAR ALRKQRAQLD RTRSSAQRAL RGLRFISNKQ KNVDGWNDVQ
201: SNFEKFEKNG YIYRSDFAQC IGMKDSKEFA LELFDALSRR RRLKVEKINH DELYEYWSQI NDESFDSRLQ IFFDIVDKNE DGRITEEEVK EIIMLSASAN
301: KLSRLKEQAE EYAALIMEEL DPERLGYIEL WQLETLLLQK DTYLNYSQAL SYTSQALSQN LQGLRGKSRI HRMSSDFVYI MQENWKRIWV LSLWIMIMIG
401: LFLWKFFQYK QKDAFHVMGY CLLTAKGAAE TLKFNMALIL FPVCRNTITW LRSTRLSYFV PFDDNINFHK TIAGAIVVAV ILHIGDHLAC DFPRIVRATE
501: YDYNRYLFHY FQTKQPTYFD LVKGPEGITG ILMVILMIIS FTLATRWFRR NLVKLPKPFD RLTGFNAFWY SHHLFVIVYI LLILHGIFLY FAKPWYVRTT
601: WMYLAVPVLL YGGERTLRYF RSGSYSVRLL KVAIYPGNVL TLQMSKPTQF RYKSGQYMFV QCPAVSPFEW HPFSITSAPE DDYISIHIRQ LGDWTQELKR
701: VFSEVCEPPV GGKSGLLRAD ETTKKSLPKL LIDGPYGAPA QDYRKYDVLL LVGLGIGATP FISILKDLLN NIVKMEEHAD SISDFSRSSE YSTGSNGDTP
801: RRKRILKTTN AYFYWVTREQ GSFDWFKGVM NEVAELDQRG VIEMHNYLTS VYEEGDARSA LITMVQALNH AKNGVDIVSG TRVRTHFARP NWKKVLTKLS
901: SKHCNARIGV FYCGVPVLGK ELSKLCNTFN QKGSTKFEFH KEHF

Arabidopsis Description

RBOHFRespiratory burst oxidase homolog protein F [Source:UniProtKB/Swiss-Prot;Acc:O48538]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.