Factsheet for PGSC0003DMT400032088

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
plasma membrane 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400058480
PGSC0003DMT400066617
PGSC0003DMT400082382

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64060.1	PGSC0003DMT400066617	AT4G33950.1	19716822
AT1G64060.1	PGSC0003DMT400058480	AT5G21326.1	23162070
AT1G64060.1	PGSC0003DMT400082382	AT5G21326.1	23162070

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g081690.2.1	Tomato	cytosol	97.21	18.07
VIT_02s0025g00510.t01	Wine grape	cytosol	87.15	16.54
KRH27880	Soybean	cytosol	81.56	15.75
KRH77593	Soybean	cytosol	80.45	15.53
KRH41250	Soybean	cytosol	81.01	15.41
KRH59983	Soybean	cytosol, nucleus, plasma membrane	81.01	15.41
CDY38202	Canola	mitochondrion	78.21	14.85
Bra027764.1-P	Field mustard	mitochondrion	78.21	14.77
CDY08347	Canola	mitochondrion	77.65	14.72
GSMUA_Achr9P05450_001	Banana	mitochondrion	70.95	14.58
AT1G64060.1	Thale cress	cytosol	76.54	14.51
GSMUA_Achr6P31850_001	Banana	mitochondrion	71.51	14.35
Zm00001d038762_P001	Maize	plastid	72.07	13.61
KXG22389	Sorghum	mitochondrion	72.07	13.48
Zm00001d043543_P002	Maize	mitochondrion	69.83	13.26
EES01429	Sorghum	mitochondrion	69.83	13.24
TraesCS3B01G314000.2	Wheat	mitochondrion	68.72	13.03
TraesCS3D01G279900.1	Wheat	mitochondrion	68.72	13.0
TraesCS1A01G347700.1	Wheat	mitochondrion	68.16	12.7
TraesCS1D01G350600.1	Wheat	mitochondrion	68.16	12.6
TraesCS3A01G280200.1	Wheat	mitochondrion	68.72	12.6
TraesCS1B01G362200.1	Wheat	mitochondrion	68.16	12.55
PGSC0003DMT400066027	Potato	peroxisome	31.84	12.45
PGSC0003DMT400040179	Potato	cytosol	53.63	12.37
PGSC0003DMT400035268	Potato	mitochondrion	62.57	11.91
PGSC0003DMT400078138	Potato	cytosol, nucleus, plastid	54.75	11.75
PGSC0003DMT400063688	Potato	cytosol	53.07	10.96
PGSC0003DMT400036734	Potato	cytosol, nucleus, plasma membrane	56.42	10.77
PGSC0003DMT400024558	Potato	plasma membrane, vacuole	17.88	4.53
PGSC0003DMT400026254	Potato	plasma membrane	17.32	4.4
PGSC0003DMT400000536	Potato	plastid	16.76	4.16
PGSC0003DMT400046647	Potato	plasma membrane	16.2	4.15
PGSC0003DMT400046925	Potato	plasma membrane	15.64	3.78
PGSC0003DMT400074349	Potato	plasma membrane	13.97	3.35
Os01t0734200-00	Rice	mitochondrion, nucleus	0.0	0.0
HORVU3Hr1G069690.1	Barley	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400032088	EnsemblPlantsGene:PGSC0003DMG400012316	Gene3D:3.40.50.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0055114	InterPro:Fe_red_NAD-bd_6	PANTHER:PTHR11972	PANTHER:PTHR11972:SF66
PFAM:PF08030	PGSC:PGSC0003DMG400012316	UniParc:UPI000295BD69	UniProt:M1AWU4	MapMan:10.1.1	:

Description

Respiratory burst oxidase homolog protein A [Source:PGSC_GENE;Acc:PGSC0003DMG400012316]

Coordinates

chr8:+:55372970..55374651

Molecular Weight (calculated)

20408.3 Da

IEP (calculated)

9.584

GRAVY (calculated)

-0.422

Length

179 amino acids

Sequence
(BLAST)

001: MFIFCYQDLV SDFSGNSDMS AATSEQPALN KISPKKRKST LKTTNAYFYW VTREQGSFDW FKGVMNEVAE LDQRGVIEMH NYLTSVYEEG DARSALITMV
101: QALNHAKNGV DIVSGTSVRT HFARPNWRKV FSKTLTKHAN ARIGVFYCGA PILAKELSKL CKEFNQKGTT KFEFHKEHF

Best Arabidopsis Sequence Match ( AT1G19230.1 )
(BLAST)

001: MKLSPLSFST SSSFSHADGI DDGVELISSP FAGGAMLPVF LNDLSRNSGE SGSGSSWERE LVEVTLELDV GDDSILVCGM SEAASVDSRA RSVDLVTARL
101: SRNLSNASTR IRQKLGKLLR SESWKTTTSS TAGERDRDLE RQTAVTLGIL TARDKRKEDA KLQRSTSSAQ RALKGLQFIN KTTRGNSCVC DWDCDCDQMW
201: KKVEKRFESL SKNGLLARDD FGECVGMVDS KDFAVSVFDA LARRRRQKLE KITKDELHDF WLQISDQSFD ARLQIFFDMA DSNEDGKITR EEIKELLMLS
301: ASANKLAKLK EQAEEYASLI MEELDPENFG YIELWQLETL LLQRDAYMNY SRPLSTTSGG VNNWQRSWVL LVWVMLMAIL FVWKFLEYRE KAAFKVMGYC
401: LTTAKGAAET LKLNMALVLL PVCRNTLTWL RSTRARACVP FDDNINFHKI IACAIAIGIL VHAGTHLACD FPRIINSSPE QFVLIASAFN GTKPTFKDLM
501: TGAEGITGIS MVILTTIAFT LASTHFRRNR VRLPAPLDRL TGFNAFWYTH HLLVVVYIML IVHGTFLFFA DKWYQKTTWM YISVPLVLYV AERSLRACRS
601: KHYSVKILKV SMLPGEVLSL IMSKPPGFKY KSGQYIFLQC PTISRFEWHP FSITSAPGDD QLSVHIRTLG DWTEELRRVL TVGKDLSTCV IGRSKFSAYC
701: NIDMINRPKL LVDGPYGAPA QDYRSYDVLL LIGLGIGATP FISILKDLLN NSRDEQTDNE FSRSDFSWNS CTSSYTTATP TSTHGGKKKA VKAHFYWVTR
801: EPGSVEWFRG VMEEISDMDC RGQIELHNYL TSVYDEGDAR STLIKMVQAL NHAKHGVDIL SGTRVRTHFA RPNWKEVFSS IARKHPNSTV GVFYCGIQTV
901: AKELKKQAQD MSQKTTTRFE FHKEHF

Arabidopsis Description

RBOHERespiratory burst oxidase homolog protein E [Source:UniProtKB/Swiss-Prot;Acc:O81211]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.