Factsheet for PGSC0003DMT400035268

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g042460.1.1	Tomato	cytosol	88.51	94.44
VIT_11s0016g00540.t01	Wine grape	cytosol, peroxisome, plastid	74.47	76.34
PGSC0003DMT400066027	Potato	peroxisome	34.36	70.52
KRH37549	Soybean	cytosol	67.87	68.75
KRH12608	Soybean	cytosol	68.3	68.59
GSMUA_Achr3P05840_001	Banana	mitochondrion	63.09	66.63
GSMUA_Achr8P23680_001	Banana	mitochondrion	62.45	65.88
CDY21676	Canola	cytosol, peroxisome, plasma membrane, plastid	64.79	65.2
AT1G19230.2	Thale cress	cytosol, peroxisome, plasma membrane	65.85	65.02
CDX81920	Canola	cytosol, nucleus, plasma membrane, plastid	63.72	64.13
Bra031070.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	64.36	63.02
PGSC0003DMT400032088	Potato	cytosol, nucleus, peroxisome	11.91	62.57
TraesCS6D01G164500.1	Wheat	mitochondrion, plasma membrane	60.96	60.32
TraesCS6A01G180600.1	Wheat	mitochondrion	61.17	60.15
Zm00001d032079_P001	Maize	mitochondrion	62.34	60.04
TraesCS5B01G212100.1	Wheat	mitochondrion	62.87	60.0
CDY41031	Canola	cytosol, peroxisome, plasma membrane	64.89	59.98
TraesCS6B01G205000.1	Wheat	mitochondrion	61.06	59.98
TraesCS5A01G211800.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	62.77	59.66
HORVU5Hr1G062490.8	Barley	plasma membrane	62.55	59.57
Bra025721.1-P	Field mustard	cytosol, nucleus, peroxisome	65.32	59.32
Os09t0438000-01	Rice	mitochondrion	63.51	59.28
TraesCS5D01G222100.1	Wheat	mitochondrion	62.66	59.26
KXG25273	Sorghum	mitochondrion	63.3	59.03
KXG35704	Sorghum	mitochondrion	62.98	58.79
CDY26689	Canola	cytosol, peroxisome, plasma membrane	63.09	58.31
HORVU6Hr1G035970.2	Barley	mitochondrion	58.83	57.66
PGSC0003DMT400063688	Potato	cytosol	46.81	50.75
PGSC0003DMT400040179	Potato	cytosol	41.38	50.13
Zm00001d020609_P001	Maize	mitochondrion	37.77	50.07
PGSC0003DMT400078138	Potato	cytosol, nucleus, plastid	43.09	48.56
PGSC0003DMT400036734	Potato	cytosol, nucleus, plasma membrane	47.98	48.08
Os08t0453700-00	Rice	plastid	47.34	46.84
PGSC0003DMT400046647	Potato	plasma membrane	14.57	19.6
PGSC0003DMT400046925	Potato	plasma membrane	15.32	19.43
PGSC0003DMT400024558	Potato	plasma membrane, vacuole	13.62	18.1
PGSC0003DMT400026254	Potato	plasma membrane	13.51	18.01
PGSC0003DMT400000536	Potato	plastid	13.3	17.34
PGSC0003DMT400074349	Potato	plasma membrane	12.45	15.66

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	EntrezGene:102588492	Gene3D:2.40.30.10	Gene3D:3.40.50.80	InterPro:Cyt_b245_heavy_chain
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom
InterPro:Fe_red_NAD-bd_6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0046872	GO:GO:0050664	GO:GO:0055114
GO:GO:0098869	InterPro:IPR002048	InterPro:IPR017927	UniProt:M1B222	InterPro:NADPH_Ox	PFAM:PF01794
PFAM:PF08022	PFAM:PF08030	PFAM:PF08414	EnsemblPlantsGene:PGSC0003DMG400013550	PGSC:PGSC0003DMG400013550	EnsemblPlants:PGSC0003DMT400035268
PRINTS:PR00466	ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF44
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix	UniParc:UPI000295E4A1
RefSeq:XP_006353773.1	SEG:seg	:	:	:	:

Description

Respiratory burst oxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400013550]

Coordinates

chr7:-:40410989..40419420

Molecular Weight (calculated)

106011.0 Da

IEP (calculated)

8.763

GRAVY (calculated)

-0.141

Length

940 amino acids

Sequence
(BLAST)

001: MQLKSFLRSS SLGSCSSKRS SYSRNFDLPE EIVVPLDTGG EYVGGAMLPI FLNDLRRNND NDLVEVTLEL DDNSIVLCSV APTPSHINDE GSEEGEDEAP
101: PNGFLARSAS AASKLRRKFS WIRSPSVMSR TSAAASEVSD DNFQPNTLSA REEMKSKLKL VRSKSTAQRA LGGLRFISKT TGESDTNVLW KKVEARFHAL
201: AKDGLLARED FGECIGMVDS KEFAVGVFDA LIRRRRQKAA KITKIELHDF WLQISDQSFD ARLQIFFDMA DSNGDGKITR DEVQELIMLS ASANKLSKLK
301: ERAAEYASLI MEELDPECLG YIELWQLETL LLQRDNYMTY SRPLSTTSVG WGQNLGTLNK TKNLVKRASY AFKCLVLDNW QRGWILLLWV MIMAGLFTWK
401: FLQYRRRAAF QVMGYCLATA KGAAETLKLN MALILLPVCR NILTWLRSTR AKLVLPFDDN INFHKIIAYA IGVGILLHAV NHLACDFPRL INSSPEKFAL
501: IASDFDNVKP TFKSLLTGIE GVTGIAMVIL MAIVFTLATS SFRRNVLKLP PPFSRLTGFN AFWYSHHLLA VVYVLLLVHG TFVFLVHQWW QKTTWMYISM
601: PLLLYVAERS LRTCRSEHYA AKILKVSVLP GDVFSLTMSK PNSFKYKSGQ YIFLQCPTIS SFEWHPFSIT SAPGDDYLSV HIRMVGDWTN ELKRVFTEDD
701: SSACEIGRAK FRERGNVDQR GLPRLLVDGP YGAPAQDYQN YDVLLLVGLG IGATPFISIL KDLLNNSRSE ELDSTTETSA SDDSWTSLAS SSIASTGKKK
801: SLRTKSAHFY WVTREPGSFE WFKGVMNEVA EMDHKGLIEM HNYLTSVYEE GDARSTLITM VQALNHAKHG VDILSGTQVR THFARPNWKE VFNKIASKHP
901: YSTVGVFYCG LPALAKELKK LSQELTYKTT TRFEFHKEYF

Best Arabidopsis Sequence Match ( AT1G19230.2 )
(BLAST)

001: MKLSPLSFST SSSFSHADGI DDGVELISSP FAGGAMLPVF LNDLSRNSGE SGSGSSWERE LVEVTLELDV GDDSILVCGM SEAASVDSRA RSVDLVTARL
101: SRNLSNASTR IRQKLGKLLR SESWKTTTSS TAGERDRDLE RQTAVTLGIL TARDKRKEDA KLQRSTSSAQ RALKGLQFIN KTTRGNSCVC DWDCDCDQMW
201: KKVEKRFESL SKNGLLARDD FGECVGMVDS KDFAVSVFDA LARRRRQKLE KITKDELHDF WLQISDQSFD ARLQIFFDMA DSNEDGKITR EEIKELLMLS
301: ASANKLAKLK EQAEEYASLI MEELDPENFG YIELWQLETL LLQRDAYMNY SRPLSTTSGG VSTPRRNLIR PRHVVQKCRK KLQCLILDNW QRSWVLLVWV
401: MLMAILFVWK FLEYREKAAF KVMGYCLTTA KGAAETLKLN MALVLLPVCR NTLTWLRSTR ARACVPFDDN INFHKIIACA IAIGILVHAG THLACDFPRI
501: INSSPEQFVL IASAFNGTKP TFKDLMTGAE GITGISMVIL TTIAFTLAST HFRRNRVRLP APLDRLTGFN AFWYTHHLLV VVYIMLIVHG TFLFFADKWY
601: QKTTWMYISV PLVLYVAERS LRACRSKHYS VKILKVSMLP GEVLSLIMSK PPGFKYKSGQ YIFLQCPTIS RFEWHPFSIT SAPGDDQLSV HIRTLGDWTE
701: ELRRVLTVGK DLSTCVIGRS KFSAYCNIDM INRPKLLVDG PYGAPAQDYR SYDVLLLIGL GIGATPFISI LKDLLNNSRD EQTDNEFSRS DFSWNSCTSS
801: YTTATPTSTH GGKKKAVKAH FYWVTREPGS VEWFRGVMEE ISDMDCRGQI ELHNYLTSVY DEGDARSTLI KMVQALNHAK HGVDILSGTR VRTHFARPNW
901: KEVFSSIARK HPNSTVGVFY CGIQTVAKEL KKQAQDMSQK TTTRFEFHKE HF

Arabidopsis Description

RBOHERespiratory burst oxidase homolog protein E [Source:UniProtKB/Swiss-Prot;Acc:O81211]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.