Factsheet for Zm00001d032079_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plasma membrane
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25273	Sorghum	mitochondrion	92.73	89.78
TraesCS6D01G164500.1	Wheat	mitochondrion, plasma membrane	78.59	80.74
TraesCS6A01G180600.1	Wheat	mitochondrion	78.38	80.02
TraesCS6B01G205000.1	Wheat	mitochondrion	78.28	79.83
HORVU6Hr1G035970.2	Barley	mitochondrion	75.0	76.33
GSMUA_Achr3P05840_001	Banana	mitochondrion	69.47	76.18
GSMUA_Achr8P23680_001	Banana	mitochondrion	69.47	76.09
Zm00001d020609_P001	Maize	mitochondrion	48.46	66.71
Os08t0453700-00	Rice	plastid	64.86	66.63
VIT_11s0016g00540.t01	Wine grape	cytosol, peroxisome, plastid	60.45	64.34
Solyc05g025680.1.1	Tomato	plasma membrane	41.09	64.26
Solyc07g042460.1.1	Tomato	cytosol	56.86	63.0
PGSC0003DMT400035268	Potato	mitochondrion	60.04	62.34
KRH37549	Soybean	cytosol	58.71	61.75
KRH12608	Soybean	cytosol	59.12	61.65
PGSC0003DMT400066027	Potato	peroxisome	27.77	59.17
AT1G19230.2	Thale cress	cytosol, peroxisome, plasma membrane	57.68	59.14
CDY21676	Canola	cytosol, peroxisome, plasma membrane, plastid	55.74	58.24
CDX81920	Canola	cytosol, nucleus, plasma membrane, plastid	55.23	57.71
Bra031070.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	55.64	56.56
CDY41031	Canola	cytosol, peroxisome, plasma membrane	56.15	53.88
Bra025721.1-P	Field mustard	cytosol, nucleus, peroxisome	57.07	53.82
Zm00001d043543_P002	Maize	mitochondrion	51.64	53.45
Zm00001d038762_P001	Maize	plastid	51.02	52.53
CDY26689	Canola	cytosol, peroxisome, plasma membrane	54.51	52.31
Zm00001d009349_P004	Maize	plastid	42.93	50.97
Zm00001d040974_P002	Maize	cytosol, peroxisome, plasma membrane, plastid	42.73	49.52
Zm00001d040805_P003	Maize	cytosol	44.98	48.83
Zm00001d009248_P002	Maize	cytosol	44.67	48.61
Zm00001d052653_P003	Maize	cytosol, plastid	47.75	47.99
Zm00001d023859_P001	Maize	plastid	43.65	47.23
Zm00001d042961_P002	Maize	plasma membrane	41.7	46.09
Zm00001d007421_P004	Maize	cytosol	44.47	45.78
Zm00001d007430_P002	Maize	cytosol	37.91	45.01
Solyc05g025690.1.1	Tomato	mitochondrion	11.07	44.63
Zm00001d007426_P001	Maize	cytosol, plastid	42.83	42.01
Zm00001d029861_P002	Maize	plastid	30.02	38.81
Zm00001d003559_P001	Maize	plasma membrane	13.63	17.5

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	EntrezGene:103643238	Gene3D:2.40.30.10	UniProt:A0A1D6KNE5	InterPro:Cyt_b245_heavy_chain
InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6
GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0050664	GO:GO:0055114	GO:GO:0098869	InterPro:IPR002048	InterPro:IPR017927	InterPro:NADPH_Ox
ProteinID:ONM04340.1	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030	PFAM:PF08414	PRINTS:PR00466
PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF80	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF47473
SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix	UniParc:UPI0004DEAD42	EnsemblPlantsGene:Zm00001d032079	EnsemblPlants:Zm00001d032079_P001
EnsemblPlants:Zm00001d032079_T001	SEG:seg	:	:	:	:

Description

Riboflavin synthase-like superfamily protein

Coordinates

chr1:-:211796761..211802432

Molecular Weight (calculated)

108976.0 Da

IEP (calculated)

9.767

GRAVY (calculated)

-0.178

Length

976 amino acids

Sequence
(BLAST)

001: MWAPSRGSSS GSGRRTWRRR IADYLADDQT DVSDNESFIT AHSDEHAAPA SGAGGMLPAF LADQGDLVEV MLELDEESMV VRSVTPTAAA LCGPTSLPLP
101: GARSLSRCSS TSSRIRRKFA WLRSPSPRPP AATAASDQQV VVREAALAAR ERRRAQARLD RSRSGARRAL KGLRFISRTT GSSDADAGAG AGLWRGVEER
201: FNALATDGLL ARDDFGDCIG MVDSKEFAVG IFDALARRRR QNLERISKDE LYEFWLQISD QSFDARLQIF FDMVDTNVDG RITREEVQEL IVLSASANKL
301: SKLKEQAEEY ASLIMEELDP ENLGYIELWQ LEALLLQRDA YMTYSRPMSS GSAAQWSQGL SGGAGAGGQP SAQQQQGVAS RWRRWSPRRA AARARVAAAE
401: SWRRAWVLAL WVAAMAALFA WRFVQYRRSA AFRVMGYCLP TAKGAAETLK LNMALVLLPV CRNTLTWLRS TWARFFVPFD DSIAFHKIIA TAIALGICLH
501: AGNHLACDFP RLIASAPEEY RLVARFFGRD RPSYRGLLAG AEGVTGIVMV TLMAVSFTLA TRPFRKREEA SRDKKKAAAC ACRGVPLAGF NAFWYSHHLL
601: IVVYLLLLVH GWFMFLVDKW YQRTTWMYIS VPLALYVGER TLRAFRSKAY AVKILKVCLL PGNVLTVTMS KPYGFRYRSG QYIFLQCPTI SPFEWHPFSI
701: TSAPGDDCVS VHVQTRGDWT QELKRIFVEN YFTPCVPRRA AFGDLGAVDH KTKSPPRLLV DGPYGAPAQD FRNYDVLLLV GLGIGATPFI SILRDLLNNI
801: KLADELMDLA METGRAEDSA SNLSASTASG GGNKRRAYRT TCAHFYWVTR EPGSFEWFKG VMNEVAEMDN KGVIELHNYL TSVYEERDAR TTLLSMVQAL
901: NHAKHGVDIV SGTRVRTHFA RPNWKEVFTR IASKHPNSTV GVFYCGRPTL AKELKKLSLD MSHRTGTRFD FHKEYF

Best Arabidopsis Sequence Match ( AT1G19230.2 )
(BLAST)

001: MKLSPLSFST SSSFSHADGI DDGVELISSP FAGGAMLPVF LNDLSRNSGE SGSGSSWERE LVEVTLELDV GDDSILVCGM SEAASVDSRA RSVDLVTARL
101: SRNLSNASTR IRQKLGKLLR SESWKTTTSS TAGERDRDLE RQTAVTLGIL TARDKRKEDA KLQRSTSSAQ RALKGLQFIN KTTRGNSCVC DWDCDCDQMW
201: KKVEKRFESL SKNGLLARDD FGECVGMVDS KDFAVSVFDA LARRRRQKLE KITKDELHDF WLQISDQSFD ARLQIFFDMA DSNEDGKITR EEIKELLMLS
301: ASANKLAKLK EQAEEYASLI MEELDPENFG YIELWQLETL LLQRDAYMNY SRPLSTTSGG VSTPRRNLIR PRHVVQKCRK KLQCLILDNW QRSWVLLVWV
401: MLMAILFVWK FLEYREKAAF KVMGYCLTTA KGAAETLKLN MALVLLPVCR NTLTWLRSTR ARACVPFDDN INFHKIIACA IAIGILVHAG THLACDFPRI
501: INSSPEQFVL IASAFNGTKP TFKDLMTGAE GITGISMVIL TTIAFTLAST HFRRNRVRLP APLDRLTGFN AFWYTHHLLV VVYIMLIVHG TFLFFADKWY
601: QKTTWMYISV PLVLYVAERS LRACRSKHYS VKILKVSMLP GEVLSLIMSK PPGFKYKSGQ YIFLQCPTIS RFEWHPFSIT SAPGDDQLSV HIRTLGDWTE
701: ELRRVLTVGK DLSTCVIGRS KFSAYCNIDM INRPKLLVDG PYGAPAQDYR SYDVLLLIGL GIGATPFISI LKDLLNNSRD EQTDNEFSRS DFSWNSCTSS
801: YTTATPTSTH GGKKKAVKAH FYWVTREPGS VEWFRGVMEE ISDMDCRGQI ELHNYLTSVY DEGDARSTLI KMVQALNHAK HGVDILSGTR VRTHFARPNW
901: KEVFSSIARK HPNSTVGVFY CGIQTVAKEL KKQAQDMSQK TTTRFEFHKE HF

Arabidopsis Description

RBOHERespiratory burst oxidase homolog protein E [Source:UniProtKB/Swiss-Prot;Acc:O81211]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.