Factsheet for VIT_11s0016g00540.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g025680.1.1	Tomato	plasma membrane	50.71	74.52
PGSC0003DMT400035268	Potato	mitochondrion	76.34	74.47
Solyc07g042460.1.1	Tomato	cytosol	70.77	73.67
KRH37549	Soybean	cytosol	72.74	71.88
KRH12608	Soybean	cytosol	72.85	71.37
GSMUA_Achr3P05840_001	Banana	mitochondrion	67.18	69.21
GSMUA_Achr8P23680_001	Banana	mitochondrion	66.41	68.35
PGSC0003DMT400066027	Potato	peroxisome	32.82	65.72
CDY21676	Canola	cytosol, peroxisome, plasma membrane, plastid	66.63	65.42
AT1G19230.2	Thale cress	cytosol, peroxisome, plasma membrane	67.18	64.71
CDX81920	Canola	cytosol, nucleus, plasma membrane, plastid	65.54	64.35
Bra031070.1-P	Field mustard	cytosol, peroxisome, plasma membrane, plastid	66.19	63.23
TraesCS5B01G212100.1	Wheat	mitochondrion	65.98	61.42
TraesCS5A01G211800.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	65.76	60.97
TraesCS5D01G222100.1	Wheat	mitochondrion	65.87	60.76
Os09t0438000-01	Rice	mitochondrion	66.52	60.58
TraesCS6D01G164500.1	Wheat	mitochondrion, plasma membrane	62.7	60.53
HORVU5Hr1G062490.8	Barley	plasma membrane	65.1	60.49
KXG35704	Sorghum	mitochondrion	66.41	60.48
Zm00001d032079_P001	Maize	mitochondrion	64.34	60.45
TraesCS6B01G205000.1	Wheat	mitochondrion	62.7	60.08
CDY41031	Canola	cytosol, peroxisome, plasma membrane	66.63	60.08
TraesCS6A01G180600.1	Wheat	mitochondrion	62.6	60.04
Bra025721.1-P	Field mustard	cytosol, nucleus, peroxisome	67.28	59.61
KXG25273	Sorghum	mitochondrion	64.99	59.13
CDY26689	Canola	cytosol, peroxisome, plasma membrane	64.78	58.41
HORVU6Hr1G035970.2	Barley	mitochondrion	60.41	57.77
VIT_02s0025g00510.t01	Wine grape	cytosol	58.67	57.05
Solyc05g025690.1.1	Tomato	mitochondrion	13.85	52.48
Zm00001d020609_P001	Maize	mitochondrion	39.91	51.62
VIT_14s0060g02320.t01	Wine grape	cytosol	48.75	50.0
VIT_06s0004g03790.t01	Wine grape	nucleus	45.91	49.41
VIT_01s0150g00440.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	49.4	49.03
VIT_19s0014g02830.t01	Wine grape	cytosol	44.82	48.93
Os08t0453700-00	Rice	plastid	50.38	48.63
VIT_01s0150g00450.t01	Wine grape	cytosol	48.2	47.89
VIT_03s0063g00950.t01	Wine grape	extracellular, vacuole	8.29	35.68
VIT_17s0000g09160.t01	Wine grape	plasma membrane	15.49	20.2
VIT_12s0035g02150.t01	Wine grape	plasma membrane	16.14	20.14
VIT_16s0050g00980.t01	Wine grape	plasma membrane	14.5	18.63
VIT_15s0046g01900.t01	Wine grape	plasma membrane	13.74	18.18
VIT_15s0046g01920.t01	Wine grape	plasma membrane	14.18	17.33
VIT_16s0050g00990.t01	Wine grape	plastid	14.72	11.46

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	EntrezGene:100266386	wikigene:100266386	Gene3D:2.40.30.10	ProteinID:CBI27762
ProteinID:CBI27762.3	InterPro:Cyt_b245_heavy_chain	UniProt:D7TCA4	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
InterPro:FAD-bd_8	EMBL:FN595756	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6	GO:GO:0003674
GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0050664
GO:GO:0055114	GO:GO:0098869	InterPro:IPR002048	InterPro:IPR017927	EntrezGene:LOC100266386	wikigene:LOC100266386
InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030	PFAM:PF08414	PRINTS:PR00466
ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF44	InterPro:Riboflavin_synthase-like_b-brl
SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix	UniParc:UPI00015C9018	ArrayExpress:VIT_11s0016g00540
EnsemblPlantsGene:VIT_11s0016g00540	EnsemblPlants:VIT_11s0016g00540.t01	unigene:Vvi.20558	RefSeq:XP_002277540	RefSeq:XP_002277540.1	SEG:seg

Description

No Description!

Coordinates

chr11:+:542722..548854

Molecular Weight (calculated)

103816.0 Da

IEP (calculated)

9.581

GRAVY (calculated)

-0.208

Length

917 amino acids

Sequence
(BLAST)

001: MRTPSPGSSS KRSNYSRTYD FPEELVDSGD YAVGGAMLPI FLNDLRPNHR QDLVEVTLEL EDDSIVLCSV TPTATANPSG DEAATGFLGR SLSATSKLCR
101: KFSWLRSTSS RASSEAEDPT ISARDARKIT AKLQRTRSSA QQALKGLRFI RKTTGASDAD ELWKKVESRF KSLAKDGLLS REDFGECIGM VDSKEFAVGI
201: FDALARRRRQ KMGRITKEEL RDFWLQISDQ SFDARLQIFF DMADSNADGR ITRKEVQELI MLSASANKLS KLKEQAAEYA SLIMEELDPE NLGYIELWQL
301: ETLLLQRDTY MNYSRELSTA STVAWSQNVS PFRPKNVMRR VSFTVRCVLI ENWQRTWIIL LWVMAMGGLF AWKLNQYRNR AAFQVMGYCL AAAKGAAETL
401: KLNMALILLP VCRNMLTWLR STRARLFIPF DDNINFHKII ACAIAIGVLV HAGTHLACDF PRLVNSSQEK FDLISSDFNH KKPTYRDLLG GVEGVTGISM
501: VILMAISFTL ATHRFRKNVV RLSAPFNRLT GFNAFWYSHH LLGVVYILLL VHGTFVFLVH QWYEKTTWMY ISVPFLLYVA ERSLRTCRSE HYSVKILKVS
601: VLPGAVLSLI MSKPNGFKYK SGQYIFLQCP AISSFEWHPF TITSAPGDDH LSVHIRTVGD WTQELKRVFT ESNNSRSVIG RAKFNQLGHI DQRGLPRLLV
701: DGPYGAPAQD YLNYDVLLLV GLGIGATPFI SILRDLLNNT RTEEQTDSTT DISRSEDSLN SFTSSNSTLG TLGGKKKSQR TTSAHFYWVT REHGSFDWFK
801: GVMNEVAEMD LKGQIEMHNY LTSVYEEGDA RSTLLTMVQA IKHAKHGVDI LSGTRVRTHF ARPNWKEVFT KIASKHPNAT VGVFYCGMPV LAKDLKKLSQ
901: ELTHKTSTRF EFHKEYF

Best Arabidopsis Sequence Match ( AT1G19230.2 )
(BLAST)

001: MKLSPLSFST SSSFSHADGI DDGVELISSP FAGGAMLPVF LNDLSRNSGE SGSGSSWERE LVEVTLELDV GDDSILVCGM SEAASVDSRA RSVDLVTARL
101: SRNLSNASTR IRQKLGKLLR SESWKTTTSS TAGERDRDLE RQTAVTLGIL TARDKRKEDA KLQRSTSSAQ RALKGLQFIN KTTRGNSCVC DWDCDCDQMW
201: KKVEKRFESL SKNGLLARDD FGECVGMVDS KDFAVSVFDA LARRRRQKLE KITKDELHDF WLQISDQSFD ARLQIFFDMA DSNEDGKITR EEIKELLMLS
301: ASANKLAKLK EQAEEYASLI MEELDPENFG YIELWQLETL LLQRDAYMNY SRPLSTTSGG VSTPRRNLIR PRHVVQKCRK KLQCLILDNW QRSWVLLVWV
401: MLMAILFVWK FLEYREKAAF KVMGYCLTTA KGAAETLKLN MALVLLPVCR NTLTWLRSTR ARACVPFDDN INFHKIIACA IAIGILVHAG THLACDFPRI
501: INSSPEQFVL IASAFNGTKP TFKDLMTGAE GITGISMVIL TTIAFTLAST HFRRNRVRLP APLDRLTGFN AFWYTHHLLV VVYIMLIVHG TFLFFADKWY
601: QKTTWMYISV PLVLYVAERS LRACRSKHYS VKILKVSMLP GEVLSLIMSK PPGFKYKSGQ YIFLQCPTIS RFEWHPFSIT SAPGDDQLSV HIRTLGDWTE
701: ELRRVLTVGK DLSTCVIGRS KFSAYCNIDM INRPKLLVDG PYGAPAQDYR SYDVLLLIGL GIGATPFISI LKDLLNNSRD EQTDNEFSRS DFSWNSCTSS
801: YTTATPTSTH GGKKKAVKAH FYWVTREPGS VEWFRGVMEE ISDMDCRGQI ELHNYLTSVY DEGDARSTLI KMVQALNHAK HGVDILSGTR VRTHFARPNW
901: KEVFSSIARK HPNSTVGVFY CGIQTVAKEL KKQAQDMSQK TTTRFEFHKE HF

Arabidopsis Description

RBOHERespiratory burst oxidase homolog protein E [Source:UniProtKB/Swiss-Prot;Acc:O81211]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.