Factsheet for VIT_16s0050g00990.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
plasma membrane 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35246	Soybean	plasma membrane	41.6	69.8
PGSC0003DMT400024558	Potato	plasma membrane, vacuole	39.05	65.06
PGSC0003DMT400026254	Potato	plasma membrane	38.54	64.4
VIT_16s0050g00980.t01	Wine grape	plasma membrane	36.33	59.94
AT5G23980.1	Thale cress	plasma membrane	35.31	59.51
GSMUA_Achr8P12260_001	Banana	peroxisome	25.21	59.4
CDX88061	Canola	plasma membrane	33.28	59.21
CDY44266	Canola	plasma membrane, vacuole	34.8	58.74
CDY46972	Canola	plasma membrane, vacuole	34.72	58.6
AT5G23990.2	Thale cress	endoplasmic reticulum, plasma membrane	34.72	58.51
Bra029389.1-P	Field mustard	plasma membrane	34.63	58.45
VIT_15s0046g01900.t01	Wine grape	plasma membrane	33.87	57.58
GSMUA_Achr8P12250_001	Banana	plasma membrane	33.19	55.23
GSMUA_Achr8P12300_001	Banana	extracellular, peroxisome, plastid	10.36	53.51
VIT_15s0046g01920.t01	Wine grape	plasma membrane	33.79	53.07
Bra009719.1-P	Field mustard	golgi, plasma membrane	22.07	52.53
TraesCS2D01G393700.1	Wheat	plasma membrane	29.71	48.48
HORVU2Hr1G094150.3	Barley	golgi, plasma membrane	11.46	48.39
TraesCS2B01G414300.1	Wheat	plasma membrane	29.63	48.27
Os04t0578600-01	Rice	golgi, mitochondrion, vacuole	18.34	48.11
CDX68510	Canola	extracellular, mitochondrion, plasma membrane, plastid	5.18	48.03
TraesCS2A01G396000.1	Wheat	plasma membrane	31.24	47.42
CDY68445	Canola	plastid	19.69	43.94
GSMUA_Achr8P12270_001	Banana	plasma membrane	32.94	42.64
VIT_12s0035g02150.t01	Wine grape	plasma membrane	20.12	32.24
VIT_17s0000g09160.t01	Wine grape	plasma membrane	18.25	30.58
VIT_03s0063g00950.t01	Wine grape	extracellular, vacuole	3.74	20.66
VIT_02s0025g00510.t01	Wine grape	cytosol	12.05	15.06
VIT_06s0004g03790.t01	Wine grape	nucleus	10.78	14.91
VIT_14s0060g02320.t01	Wine grape	cytosol	11.21	14.77
VIT_11s0016g00540.t01	Wine grape	cytosol, peroxisome, plastid	11.46	14.72
VIT_19s0014g02830.t01	Wine grape	cytosol	10.02	14.05
VIT_01s0150g00450.t01	Wine grape	cytosol	10.7	13.65
VIT_01s0150g00440.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	10.53	13.42

Protein Annotations

EntrezGene:100247332	wikigene:100247332	MapMan:25.4.2.1	MapMan:25.5.2.1	Gene3D:3.40.50.80	EMBL:AM465033
ProteinID:CAN74772	ProteinID:CAN74772.1	ProteinID:CBI22668	ProteinID:CBI22668.3	InterPro:DUF819	UniProt:E0CUW8
InterPro:FAD-bd_8	EMBL:FN595243	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927	EntrezGene:LOC100247332	wikigene:LOC100247332	PFAM:PF01794
PFAM:PF05684	PFAM:PF08022	PFAM:PF08030	PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF62
SUPFAM:SSF52343	TMHMM:TMhelix	UniParc:UPI0001BE20FE	ArrayExpress:VIT_16s0050g00990	EnsemblPlantsGene:VIT_16s0050g00990	EnsemblPlants:VIT_16s0050g00990.t01
RefSeq:XP_002272836	RefSeq:XP_002272836.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr16:-:17920168..17930273

Molecular Weight (calculated)

130079.0 Da

IEP (calculated)

9.716

GRAVY (calculated)

0.475

Length

1178 amino acids

Sequence
(BLAST)

0001: MSSSSLPSPF PLLNAISPSP LLRPLLPPSS ISHRNSYSNC STCKPLIFHA NQNRHRFVKV RSQLSGPIIS PEDHWGTWTA LFATGAFGLW SEKTKIGSMV
0101: SAALVSILVG MAASNLGIIP YDAPAYSIVM EFLLPITLPL LLFRADMRQV MQSTGTLLLA FLLGSVATIA GTLVAFLVVP MRSLGQDSWK IAAALMGSYI
0201: GGAVNYVAIS KALGVSPSVL AAGIAADNVI CALYFMILFA LASKIPPETP KLTNDVALNM ESDSGSKLPV LQTATALAVS FVICLSATYL TKLFGIQGGT
0301: LPSITAIVVV LATALPMYFG YLAPAGDTIA VVLMQVFFAV VGASGSIWNV INTAPSIFMF ALVQVMVHLA VILGLGKLFR LDLKLLLLAS NANIGGPTTA
0401: CGMATAKGWS SLVVPGILAG IFGISIATFL GIGFGVMVLR HMSLSGHRRK LELYLMMDSD LVRESPAIAT PSYEGKKKKK SRHTVTRMMF LVVFLGWLMV
0501: WVLLPTKVYK QQWTPKLNSK LNSTYFGEQG TNLLLFTFPM MLIAAVGCVY LHFQKKKGNS FSRSISASHR LAFWKKPVLV MAPLGIVSAM ELVFAAMFIM
0601: LLIWSLANYL YVSFGHLHMH KQGEKVWEAK FRSVSLRLGY IGNLCWAFLF FPVTRGSSIL PLVGLTSESS IKYHIWLGHL SMVLFAAHSI GFVIYWAMTN
0701: QMAEMLEWSK TYVSNVAGEI AFLFALIMWA TSFPRVRRKM FEVFFYTHHI YTLYIFFYVL HVGTAYFCMI LPGIFLFIID RYLRFLQSRQ RARLVSARIL
0801: PSEAVELTFS KSLGLTYNPT SILFVNVPSI SKLQWHPFTV TSNCNSEPDK LSIVIKTEGS WSQKLYNKLS SLPAVDRFDV SVEGPYGPTS SHFLRHESLV
0901: MVSGGSGVAP FISIIREIIF QSTKPNCKVP GILLICAFKN SADLTMLDLL LPVSGMTSDI SQIQLQIEAY ITREKEQPAT DTQKLLRTIW FKPNTSDAPI
1001: SAALGPNSWL WLCAIIISSF IMFLLFLGIL TRYYIYPIEH GSDEIYHFSF RCLWDMFFPC AAIFLAASGV FLWHKKQATM EGKQIQNMEV PTPVASPGLW
1101: LCGSTDRELE SLPHQSLVEA TKVHFGARPD LKKILFDCKG SDVGVLVCGP RKMRHEVARI CSSGLADNLH FESISFNW

Best Arabidopsis Sequence Match ( AT5G23980.1 )
(BLAST)

001: MGNMRSLVKT LMVVLFLGWI LVWIMISTNL FKSKWTPKLS KYLNTTYFGP QGTNLVLLTV PMMFIAVLSC VYLHIQKKPT QPQREWKLKR IMGRVIMVMN
101: PLGIVTATEL TFSLLFVALL AWSLYNYLYL SYHVHLHNDD NAKIWQAKFR AFGLRIGYVG NICWAFLFFP VTRASTILPL VGLTSESSIK YHIWLGHVSN
201: FCFLVHTVVF LIYWAMINKL METFAWNPTY VPNLAGTIAM VIGIAMWVTS LPSFRRKKFE IFFYTHHLYG LYIVFYVIHV GDSWFCMILP NIFLFFIDRY
301: LRFLQSTKRS RLVSARILPS DNLELTFSKT PGLHYTPTSI LFLHVPSISK IQWHPFTITS SSNLEKDTLS VVIRRQGSWT QKLYTHLSSS IDSLEVSTEG
401: PYGPNSFDVS RHNSLILVSG GSGITPFISV IRELISQSQN KSTKLPDVLL VCSFKHYHDL AFLDLIFPLD MSASDISRLN LRIEAYITRE DKKPETTDDH
501: RLLQTKWFKP QPLDSPISPV LGPNNFLWLG VVILSSFVMF LLLIGIVTRY YIYPVDHNTG SIYNFSYRGL WDMFLGSACI FISSSVVFLW RKKQNKEGDK
601: EFKNQVQSVE FQTPTSSPGS WFHGHERELE SVPYQSIVQA TSVHFGSKPN LKKILLEAEG SEDVGVMVCG PRKMRHEVAK ICSSGLAKNL HFEAISFNW

Arabidopsis Description

FRO4Ferric reduction oxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W110]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.