Factsheet for VIT_17s0000g09160.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 7
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g112320.2.1	Tomato	plasma membrane	48.08	60.9
KRH57132	Soybean	plasma membrane	56.33	60.83
PGSC0003DMT400046647	Potato	plasma membrane	59.6	59.94
KRH03224	Soybean	peroxisome	60.46	58.95
AT5G50160.1	Thale cress	plasma membrane	51.49	49.73
Bra023239.1-P	Field mustard	plasma membrane	50.5	48.83
CDY22585	Canola	plasma membrane	50.36	48.83
CDY12264	Canola	plasma membrane	48.65	48.44
GSMUA_Achr6P28010_001	Banana	plasma membrane, plastid	47.08	42.71
VIT_15s0046g01900.t01	Wine grape	plasma membrane	31.15	31.6
VIT_16s0050g00980.t01	Wine grape	plasma membrane	31.01	30.53
VIT_15s0046g01920.t01	Wine grape	plasma membrane	31.72	29.73
VIT_12s0035g02150.t01	Wine grape	plasma membrane	30.3	28.98
VIT_16s0050g00990.t01	Wine grape	plastid	30.58	18.25
VIT_03s0063g00950.t01	Wine grape	extracellular, vacuole	5.12	16.9
VIT_11s0016g00540.t01	Wine grape	cytosol, peroxisome, plastid	20.2	15.49
VIT_06s0004g03790.t01	Wine grape	nucleus	18.63	15.38
VIT_19s0014g02830.t01	Wine grape	cytosol	18.07	15.12
VIT_14s0060g02320.t01	Wine grape	cytosol	19.06	14.99
VIT_01s0150g00440.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	19.2	14.61
VIT_02s0025g00510.t01	Wine grape	cytosol	19.35	14.42
VIT_01s0150g00450.t01	Wine grape	cytosol	18.63	14.19

Protein Annotations

EntrezGene:100241516	wikigene:100241516	MapMan:25.4.2.1	MapMan:25.5.2.1	Gene3D:3.40.50.80	ProteinID:CBI14963
ProteinID:CBI14963.3	UniProt:D7SHK3	InterPro:FAD-bd_8	EMBL:FN594950	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom
InterPro:Fe_red_NAD-bd_6	GO:GO:0000293	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005886	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927	EntrezGene:LOC100241516
wikigene:LOC100241516	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030	PFscan:PS51384	PANTHER:PTHR11972
PANTHER:PTHR11972:SF83	SUPFAM:SSF52343	TIGR:TC62393	TMHMM:TMhelix	UniParc:UPI0001985207	ArrayExpress:VIT_17s0000g09160
EnsemblPlantsGene:VIT_17s0000g09160	EnsemblPlants:VIT_17s0000g09160.t01	RefSeq:XP_002277760	RefSeq:XP_002277760.1	SEG:seg	:

Description

No Description!

Coordinates

chr17:+:10745415..10748454

Molecular Weight (calculated)

79675.2 Da

IEP (calculated)

9.566

GRAVY (calculated)

0.295

Length

703 amino acids

Sequence
(BLAST)

001: MAKATLLILK LLMILICAGW ITLWILKPTQ LWTKKWHTAE DSARTTVFGY YGLNFVVYTF PVIALAAIGF VYLDLQSRES RRRQARRSAS VLSNPLVVNN
101: YLGVLSALEI LAVSLFFLYL AWTFYVHISN DFEKMVPAKS LKRQFKFLRV ATRFGLLAEA CLALLLLPVL RGMALFRFVG VQFEASVRYH VWLGTAMIFF
201: ATFHGVSTLI VWGIKDRIQD EMGKWQKTGR IYLAGEIALV TGLVIWITSL PPIRRKRFEI FYYTHHLYIV FLLFFLFHGG DRHFYMVFGG VFLFGLDKLL
301: RIIQSRPQTC ILSARVFPCK AIELVVAKDP GLKYAPTSII FMKIPSISRF QWHSFSITSS SNIDDNTMSV IIKCGGWWTN SLSDIIHAEL DSGSNQMKCI
401: PIAIEGPYGP ASLDFLSYES LLLVAGGVGI TPFLSILQEI TSTQSSIRYR FPRRIELLYI MKKSQDICLL NPILHLLQNQ LAEQWHLKLK VFVTQEEECG
501: ATIRDLLNEF CQVQVVNFAS KCSSYAANGL ENLLWMAAMA GFSSVMFLVF LSSLNHAFLP SQDKSSKEKS PSWVADILLI CSFIIAILCS TIVAIVLRWR
601: KLRREIPPVS QKEGKAKEGL MDTRGTALEE HEIHFGGRPN FQDIFSKFPK ETRGSNIGVL VCGPETMKES VASICSQTSQ CCNMGNDQKR KSHFSFHSLN
701: FTL

Best Arabidopsis Sequence Match ( AT5G50160.1 )
(BLAST)

001: MAKVLTLLVL RLLMNLLLIG WISLWIIKPT TIWIQSWRQA EDTARHTFFG YYGLNFAVFS FPPIALSIVG LIYLSLLPQH HHPTRGGRGA AITVSRPAII
101: NSFIGIVSCF EILALLLFLL FLAWNFYARV SNDFKKLMPV KTMNLNLWQL KYYRVATRFG LLAEACLSLL LFPVLRGLSM FRLLNIEFAA SVKYHVWFGT
201: GLIFFSLVHG GSTLFIWTIT HHIEEEIWKW QRTGRVYVAG LISLVTGLLM WITSLPQIRR KNFEVFYYTH HLYIVFLVAF LFHAGDRHFY WVLPGMFLFG
301: LDKILRIVQS RSESCILSAN LFSCKAIELV LPKDPMLNYA PSSFIFLNIP LVSRFQWHPF SIISSSSVDK HSLSIMMKCE GDWTNSVYNK IEEAANCENK
401: INNIIVRVEG PYGPASVDFL RYDNLFLVAG GIGITPFLSI LKELASKNRL KSPKRVQLVF AVRTFQDLNM LLPIASIIFN PIYNLNLKLK VFVTQEKKPS
501: NGTTTLQEFL AQSQVQSIHL GTDEDYSRFP IRGPESFRWL ATLVLITVLT FLGFLIGLSH FFIPSEHKNH SGVMKLAASG AMKTAKEKVP SWVPDLIIIV
601: SYVIAISVGG FAATILQRRR KHKEAPRMSK EVVIKPEERN FTELKPIPIT EEHEIHIGER PKLEEIMSEF EKNLRGWSSV GVLVCGPESV KEAVASMCRQ
701: WPQCFGVEDL RRSRMKMNLN FHSLNFNL

Arabidopsis Description

FRO8Ferric reduction oxidase 8, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VY13]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.