Factsheet for VIT_12s0035g02150.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
plasma membrane 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11700	Soybean	plasma membrane	65.17	65.44
KRH36697	Soybean	plasma membrane	64.9	64.99
GSMUA_Achr11P...	Banana	plasma membrane	63.95	64.3
PGSC0003DMT400046925	Potato	plasma membrane	64.76	64.24
Solyc01g102610.2.1	Tomato	plastid	64.08	63.65
CDX71600	Canola	plasma membrane	62.18	61.67
Bra037953.1-P	Field mustard	plasma membrane	61.9	61.49
CDY65711	Canola	plasma membrane	61.9	61.49
AT5G49730.1	Thale cress	plasma membrane	60.95	60.7
AT5G49740.1	Thale cress	plasma membrane	61.5	60.51
Os04t0444800-02	Rice	plasma membrane	58.64	56.86
Zm00001d003559_P001	Maize	plasma membrane	58.5	56.58
EES10867	Sorghum	plasma membrane	57.82	55.48
TraesCS2A01G312600.1	Wheat	plasma membrane	56.46	55.48
TraesCS2B01G329600.1	Wheat	plasma membrane	56.33	55.42
TraesCS2D01G311100.1	Wheat	plasma membrane	56.05	55.15
HORVU2Hr1G077650.1	Barley	peroxisome, plastid	49.52	48.99
VIT_15s0046g01900.t01	Wine grape	plasma membrane	30.61	32.47
VIT_16s0050g00980.t01	Wine grape	plasma membrane	31.43	32.35
VIT_17s0000g09160.t01	Wine grape	plasma membrane	28.98	30.3
VIT_15s0046g01920.t01	Wine grape	plasma membrane	30.34	29.73
VIT_16s0050g00990.t01	Wine grape	plastid	32.24	20.12
VIT_03s0063g00950.t01	Wine grape	extracellular, vacuole	5.03	17.37
VIT_11s0016g00540.t01	Wine grape	cytosol, peroxisome, plastid	20.14	16.14
VIT_06s0004g03790.t01	Wine grape	nucleus	17.55	15.14
VIT_14s0060g02320.t01	Wine grape	cytosol	17.69	14.54
VIT_19s0014g02830.t01	Wine grape	cytosol	16.6	14.52
VIT_02s0025g00510.t01	Wine grape	cytosol	17.96	14.0
VIT_01s0150g00440.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	17.14	13.64
VIT_01s0150g00450.t01	Wine grape	cytosol	17.01	13.54

Protein Annotations

EntrezGene:100263818	wikigene:100263818	MapMan:25.4.2.1	MapMan:25.5.2.1	Gene3D:3.40.50.80	EMBL:AM481518
ProteinID:CAN83907	ProteinID:CAN83907.1	ProteinID:CBI29608	ProteinID:CBI29608.3	InterPro:Cyt_b245_heavy_chain	UniProt:D7TGI6
InterPro:FAD-bd_8	EMBL:FN595990	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927	EntrezGene:LOC100263818	wikigene:LOC100263818	PFAM:PF01794
PFAM:PF08022	PFAM:PF08030	PRINTS:PR00466	PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF41
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	TIGR:TC56753	TMHMM:TMhelix	UniParc:UPI0001BE36B0
ArrayExpress:VIT_12s0035g02150	EnsemblPlantsGene:VIT_12s0035g02150	EnsemblPlants:VIT_12s0035g02150.t01	unigene:Vvi.9339	RefSeq:XP_002266723	RefSeq:XP_002266723.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:22531017..22539481

Molecular Weight (calculated)

83212.4 Da

IEP (calculated)

6.686

GRAVY (calculated)

0.461

Length

735 amino acids

Sequence
(BLAST)

001: MDAPTQPLLS PAYVKKTPIF LSFTKWVLKI VMWVIFIFWA TLIFLFPAEP VNELFEKWLQ LSSGTVFGIT GCIFLVFSGP ILIIAFLAIV YLVISDSGEE
101: ELQEKRTSNC PRFRLWTFPV LVDGPFGVVS AAEFIGILLF IVFIIWAVCS YTLKNFSLLA EFQLPSKLEC YLMLELSGLR FGLIGLFCLA FLFLPIARGS
201: VLLRLVDIPF EHATKYHVWL GHLTMLLFTL HGLFYVIAWA MDGRLLQEIL EWKEIGVANL AGVISLIAGL LMWVTSLSPV RKQYFELFFY THQLYVVFVV
301: FLALHVGDFI FSMAAGGIFL FMLDRFLRFC QSRRTVDIIS ATYLPCGTLE LVLSKPGNLR YNALSFIFLQ VKELSWLQWH PFSVSSSPLD GKYHLSILIK
401: VLGEWTEKLR GNISNFCKEK QELPFQPHSK ITASVEGPYG HESPYHLMYE NLVLVAGGIG ISPFLAILSD ILHSARENKT CLPRNILIIW AIKKSNELSL
501: LSTVDMESIC PSFSDKVNIE IQIYVTRESE PPLEEGKINK TVNSSVFPVL SGRGLSVLVG TGNNIWSGIY VILPVLGFVL FMDLLNIYYI NPFGINSWWY
601: KGLLFVLCMV ASVVIFGGAV VGFWHLWERR ISESEELEDN QMKIGMVQHI NGSMEDKESS QESLAGTSTI QYGCRPDFKE IFGSISERWG HVDVGVIVCG
701: PPTLQASVAK ECRSQNIRRR CHDPIFHFNS HSFDL

Best Arabidopsis Sequence Match ( AT5G49740.1 )
(BLAST)

001: MDDHETPLLS KDLSSSSSSS SSSSSVVVSS LKWILKVVMS VIFVTWVVFL MMYPGSLGDQ ILTNWRAISS NTLFGLTGSM FLIFSGPILV IAILASLYLI
101: ISGEETVFTK KKITKFPRFR LWTFPVLVDG PFGVVSAAEF LGIMVFSVFF LWAIYAYTLR NLNVLDYFHV LPNNRSIFLL ELTGLRFGMI GLLCMVFLFL
201: PISRGSILLR LIDIPFEHAT RYHVWLGHIT MTFFSLHGLC YVVGWTIQGQ LLELLFEWKA TGIAVLPGVI SLVAGLLMWV TSLHTVRKNY FELFFYTHQL
301: YIVFVVFLAL HVGDYLFSIV AGGIFLFILD RFLRFYQSRR TVDVISAKSL PCGTLELVLS KPPNMRYNAL SFIFLQVKEL SWLQWHPFSV SSSPLDGNHH
401: VAVLIKVLGG WTAKLRDQLS TLYEAENQDQ LISPESYPKI TTCVEGPYGH ESPYHLAYEN LVLVAGGIGI TPFFAILSDI LHRKRDGKDC LPGKVLVVWA
501: IKNSDELSLL SAIDIPSICH FFSKKLNLEI HIYVTRQSEP CLEDGMVHKV VHPSVKTPWT NGCSMSVLVG TGDNIWSGLY LIISTIGFIA MITLVDIFYI
601: NKYNITTWWY KGLLFVVCMV ASVLIFGGLV VVFWHRWEHK TGEVEANGND KVDLNGEETH NPSAAELKGL AIEEDVQNYT TIRYGTRPAF REIFESLNGK
701: WGSVDVGVIV CGPATLQTTV AKEIRSHSIW RSANHPLFHF NSHSFDL

Arabidopsis Description

FRO7Ferric reduction oxidase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q3KTM0]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.