Factsheet for VIT_16s0050g00980.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 2
vacuole 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35248	Soybean	plasma membrane	63.87	63.96
VIT_15s0046g01900.t01	Wine grape	plasma membrane	61.34	63.2
PGSC0003DMT400074349	Potato	plasma membrane	64.01	61.18
GSMUA_Achr8P12260_001	Banana	peroxisome	42.16	60.2
VIT_15s0046g01920.t01	Wine grape	plasma membrane	61.9	58.93
Solyc06g036220.1.1	Tomato	plasma membrane	34.59	58.81
GSMUA_Achr8P12300_001	Banana	extracellular, peroxisome, plastid	18.77	58.77
GSMUA_Achr8P12250_001	Banana	plasma membrane	58.26	58.76
Os04t0578600-01	Rice	golgi, mitochondrion, vacuole	31.79	50.56
TraesCS2B01G414300.1	Wheat	plasma membrane	50.28	49.65
TraesCS2D01G393700.1	Wheat	plasma membrane	50.14	49.58
HORVU2Hr1G094150.3	Barley	golgi, plasma membrane	19.05	48.75
TraesCS2A01G396000.1	Wheat	plasma membrane	50.56	46.52
GSMUA_Achr8P12270_001	Banana	plasma membrane	54.9	43.08
VIT_16s0050g00990.t01	Wine grape	plastid	59.94	36.33
VIT_12s0035g02150.t01	Wine grape	plasma membrane	32.35	31.43
VIT_17s0000g09160.t01	Wine grape	plasma membrane	30.53	31.01
VIT_03s0063g00950.t01	Wine grape	extracellular, vacuole	5.88	19.72
VIT_14s0060g02320.t01	Wine grape	cytosol	19.05	15.21
VIT_06s0004g03790.t01	Wine grape	nucleus	17.37	14.55
VIT_02s0025g00510.t01	Wine grape	cytosol	19.19	14.53
VIT_11s0016g00540.t01	Wine grape	cytosol, peroxisome, plastid	18.63	14.5
VIT_19s0014g02830.t01	Wine grape	cytosol	16.39	13.93
VIT_01s0150g00450.t01	Wine grape	cytosol	16.81	13.0
VIT_01s0150g00440.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	16.39	12.66

Protein Annotations

EntrezGene:100252447	wikigene:100252447	MapMan:25.4.2.1	MapMan:25.5.2.1	Gene3D:3.40.50.80	EMBL:AM461674
EMBL:AM465033	ProteinID:CAN74771	ProteinID:CAN74771.1	ProteinID:CAN76960	ProteinID:CAN76960.1	ProteinID:CCB47846
ProteinID:CCB47846.1	UniProt:F6H6D5	InterPro:FAD-bd_8	EMBL:FN595243	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom
InterPro:Fe_red_NAD-bd_6	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927	EntrezGene:LOC100252447
wikigene:LOC100252447	InterPro:NADH-Cyt_B5_reductase	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030	PRINTS:PR00406
PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF79	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380
TMHMM:TMhelix	UniParc:UPI00015CBE1A	ArrayExpress:VIT_16s0050g00980	EnsemblPlantsGene:VIT_16s0050g00980	EnsemblPlants:VIT_16s0050g00980.t01	RefSeq:XP_002272804
RefSeq:XP_002272804.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr16:-:17911235..17915365

Molecular Weight (calculated)

80512.7 Da

IEP (calculated)

9.068

GRAVY (calculated)

0.315

Length

714 amino acids

Sequence
(BLAST)

001: MDPKVIRGTS SWLGVYALRS VIRLFVMAAF LGYIMVWIMM PTNTFWLHWL PDIHAKTDSK YFGQQGANLL VYTFPVLLIA TLGCLYLHLG KKCVDHDIDE
101: NSRWALWKRP VLVKGTLGIV SWIELSFLSM FFVLLVWSVS AYLHGMFANI TRQSAAKMGV QVWEAKLESA ALMLGLVGNI CLAFLFFPVT RGSSVLRLIG
201: LTSESSIKYH IWLGHTVMTL FTAHGLCYII FWAATHQSSE LLTWDEIGVS NVAGELALLS GLAMWATSFP HIRQKIFELF FYTHHLYVLF IVFFMLHVGI
301: SYSCIMLPGF YLFLIDRYLR FLQSQQRVRL VAARLLPCEA VELNFSKASG LNYTPTSTLF INVPSISKLQ WHPFTITSNS NTDPEKVSVV IKSEGSWSST
401: LYCKLSSPSL IEHLEVSIEG PYGPTSTNFL RHDMLVMVSG GSGITPFISI IRELLFRANR MSSKTPRVLL VSAFKKSLDV AMLDLLLPVS GTTSDISQLQ
501: LQIEVYVTRE TEPTRENQKL LRTIWFNFKP NTLDVPVSAI LGPNSWLWLG TIMSSSFVIF LLIIGILTRY YIQPIDHNTN MIYSYSARSA LNMLLMCVSI
601: SMPATAAFLW NKKQATKEMR QIQNTAAPTP TTSPGSWFYN ADRELEAFPH QSFVEATKVH YGERPNLRRI ISECAGSSVG VLVSGPRKMR QEVAAICSSG
701: LADNLHFESI SFNW

Best Arabidopsis Sequence Match ( AT1G01580.2 )
(BLAST)

001: MKENKKQDPW GRVTCMEHAT SLLHPIPTQN SLFIYTLSLP LLPSKQANSI LLTKAIVPIL ISLASERERD RNPERKERME IEKSNNGGSN PSAGEEFKDM
101: IKGVTKFLMM VIFLGTIMLW IMMPTLTYRT KWLPHLRIKF GTSTYFGATG TTLFMYMFPM MVVACLGCVY LHFKNRKSPH HIDRETKGGV WSKLRKPMLV
201: KGPLGIVSVT EITFLAMFVA LLLWCFITYL RNSFATITPK SAAAHDESLW QAKLESAALR LGLIGNICLA FLFLPVARGS SLLPAMGLTS ESSIKYHIWL
301: GHMVMALFTV HGLCYIIYWA SMHEISQMIM WDTKGVSNLA GEIALAAGLV MWATTYPKIR RRFFEVFFYT HYLYIVFMLF FVLHVGISFS FIALPGFYIF
401: LVDRFLRFLQ SRENVRLLAA RILPSDTMEL TFSKNSKLVY SPTSIMFVNI PSISKLQWHP FTITSSSKLE PEKLSIVIKK EGKWSTKLHQ RLSSSDQIDR
501: LAVSVEGPYG PASADFLRHE ALVMVCGGSG ITPFISVIRD LIATSQKETC KIPKITLICA FKKSSEISML DLVLPLSGLE TELSSDINIK IEAFITRDND
601: AGDEAKAGKI KTLWFKPSLS DQSISSILGP NSWLWLGAIL ASSFLIFMII IGIITRYYIY PIDHNTNKIY SLTSKTIIYI LVISVSIMAT CSAAMLWNKK
701: KYGKVESKQV QNVDRPSPTS SPTSSWGYNS LREIESTPQE SLVQRTNLHF GERPNLKKLL LDVEGSSVGV LVCGPKKMRQ KVAEICSSGL AENLHFESIS
801: FSW

Arabidopsis Description

FRO2ferric reduction oxidase 2 [Source:TAIR;Acc:AT1G01580]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.