Factsheet for VIT_14s0060g02320.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33894	Soybean	cytosol	74.94	81.21
KRH68525	Soybean	cytosol	78.86	79.66
KRG96816	Soybean	cytosol	78.97	79.59
KRG92895	Soybean	extracellular, mitochondrion	78.64	79.08
PGSC0003DMT400063688	Potato	cytosol	75.95	78.32
Solyc01g099620.2.1	Tomato	cytosol	75.06	77.57
CDY22644	Canola	plasma membrane	48.77	75.69
CDY65632	Canola	nucleus, peroxisome	12.08	75.0
GSMUA_Achr5P26970_001	Banana	cytosol, peroxisome, plasma membrane	67.34	72.18
Bra031658.1-P	Field mustard	cytosol	65.44	69.15
CDY06348	Canola	cytosol	62.19	68.14
AT1G09090.2	Thale cress	cytosol	64.21	68.09
VIT_01s0150g00440.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	66.89	64.72
HORVU4Hr1G086500.1	Barley	cytosol	60.85	64.38
TraesCS4B01G358800.1	Wheat	cytosol	60.96	64.34
TraesCS4D01G352200.3	Wheat	cytosol	60.85	64.23
TraesCS5A01G527600.1	Wheat	cytosol	60.63	63.99
VIT_01s0150g00450.t01	Wine grape	cytosol	64.32	62.3
Zm00001d040805_P003	Maize	cytosol	62.42	62.07
Zm00001d009248_P002	Maize	cytosol	62.19	61.98
TraesCS3A01G182900.1	Wheat	cytosol	62.19	61.71
TraesCS3B01G212900.5	Wheat	cytosol	62.08	61.67
TraesCS3D01G187300.2	Wheat	cytosol	61.97	61.56
Os01t0360200-01	Rice	plasma membrane	62.3	61.55
OQU86843	Sorghum	cytosol	63.31	61.26
TraesCS5D01G105900.1	Wheat	cytosol	58.84	60.81
TraesCS5B01G099700.1	Wheat	cytosol	58.95	60.37
TraesCS5A01G093600.1	Wheat	cytosol	58.72	59.86
Zm00001d023859_P001	Maize	plastid	60.29	59.76
Os12t0541300-01	Rice	plasma membrane	60.74	59.74
EES16102	Sorghum	plastid	60.4	58.95
VIT_19s0014g02830.t01	Wine grape	cytosol	55.15	58.69
HORVU5Hr1G024550.3	Barley	cytosol	53.69	55.88
VIT_02s0025g00510.t01	Wine grape	cytosol	57.38	54.4
HORVU3Hr1G037600.3	Barley	cytosol, peroxisome, plastid	27.85	54.25
VIT_11s0016g00540.t01	Wine grape	cytosol, peroxisome, plastid	50.0	48.75
VIT_06s0004g03790.t01	Wine grape	nucleus	46.42	48.71
VIT_03s0063g00950.t01	Wine grape	extracellular, vacuole	9.06	38.03
VIT_17s0000g09160.t01	Wine grape	plasma membrane	14.99	19.06
VIT_16s0050g00980.t01	Wine grape	plasma membrane	15.21	19.05
VIT_15s0046g01900.t01	Wine grape	plasma membrane	14.65	18.9
VIT_15s0046g01920.t01	Wine grape	plasma membrane	14.99	17.87
VIT_12s0035g02150.t01	Wine grape	plasma membrane	14.54	17.69
VIT_16s0050g00990.t01	Wine grape	plastid	14.77	11.21

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	EntrezGene:100261299	wikigene:100261299	Gene3D:2.40.30.10	Gene3D:3.40.50.80
EMBL:AM489166	ProteinID:CAN64415	ProteinID:CAN64415.1	ProteinID:CCB61854	ProteinID:CCB61854.1	InterPro:Cyt_b245_heavy_chain
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	UniProt:F6I4L7	InterPro:FAD-bd_8	EMBL:FN596746
InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009408	GO:GO:0009628	GO:GO:0009791	GO:GO:0009845	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016174	GO:GO:0016491	GO:GO:0050664	GO:GO:0055114
GO:GO:0098869	InterPro:IPR002048	InterPro:IPR017927	EntrezGene:LOC100261299	wikigene:LOC100261299	InterPro:NADPH_Ox
PFAM:PF01794	PFAM:PF08022	PFAM:PF08030	PFAM:PF08414	PRINTS:PR00466	ScanProsite:PS00018
PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF125	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF47473
SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix	UniParc:UPI00019849D5	ArrayExpress:VIT_14s0060g02320	EnsemblPlantsGene:VIT_14s0060g02320
EnsemblPlants:VIT_14s0060g02320.t01	unigene:Vvi.22607	RefSeq:XP_002283888	RefSeq:XP_002283888.1	SEG:seg	:

Description

No Description!

Coordinates

chr14:-:1892518..1897703

Molecular Weight (calculated)

101805.0 Da

IEP (calculated)

9.697

GRAVY (calculated)

-0.305

Length

894 amino acids

Sequence
(BLAST)

001: MEIQENHDQA SSETESVRSG RVGFSGPLSG PSSGPPSGPL LGNKKGSKKS ARFKSEEYVE ITLDVRDDSV SVQNIRGGDL ETSMLASRLE RQRPSLGSQL
101: SFRIRQVSQE LKRITSSSSK RFNKDDRSKS SATRALKGLQ FMTKNVGNEG WSAIEKRFDQ LSVNGALPKS SFGQCIGMKD SKEFASELFD ALARRRGITS
201: NSITRAELRE FWEQITDQSF DARLQTFFDM VDKDDDGRIT EGEVKEIITL SASANKLSKI QERADEYAAL IMEELDPDNL GYIELHNLEL LLLQAPNPST
301: NLTTNSRILS QLLSQKLVPT KEPNPIKRCF RGIEYFIEDN WKRIWVVLLW LAICAGLFTW KFIQYKNRAV FEVMGYCVTA AKGAAETLKF NMALILFPVC
401: RNTITWLRSR TKLGMAVPFD DNINFHKVIA FGIALGVGVH AIAHLTCDFP RLLHATEEQY EPMEKYFGHD QPRSYWWFVK GTEGWTGVVM VVLMAIAYIL
501: AQPWFRRNRL NLPKTLKRLT GFNAFWYSHH LFIIVYVLFV IHGYYLYLTK KWYKKTTWMY LAVPIILYAC ERLIRAFRSG YKSVRILKVA VYPGNVLALH
601: MSKPQGFKYT SGQYMFVNCS AVSAFQWHPF SITSAPGDEY LSIYIRTLGD WTSQLKTVFS KACQPSNENQ SGLLRADMMK GENKPRLPKL LIDGPYGAPA
701: QDYKKYDVVL LVGLGIGATP LISIVKDVLN NVKQYQELEE GMTESNGERG NARKPFATRR AYFYWVTREQ GSFEWFRSVM NEVTENDKDG VIELHNYCTS
801: VYEEGDARSA LIAMLQSLHH AKNGVDIVSG TRVKTHFARP NWRNVFKRVA LNHANQRVGV FYCGAPTLTG ELKRLALDFS RKTSTKFDFH KENF

Best Arabidopsis Sequence Match ( AT5G47910.1 )
(BLAST)

001: MKMRRGNSSN DHELGILRGA NSDTNSDTES IASDRGAFSG PLGRPKRASK KNARFADDLP KRSNSVAGGR GDDDEYVEIT LDIRDDSVAV HSVQQAAGGG
101: GHLEDPELAL LTKKTLESSL NNTTSLSFFR STSSRIKNAS RELRRVFSRR PSPAVRRFDR TSSAAIHALK GLKFIATKTA AWPAVDQRFD KLSADSNGLL
201: LSAKFWECLG MNKESKDFAD QLFRALARRN NVSGDAITKE QLRIFWEQIS DESFDAKLQV FFDMVDKDED GRVTEEEVAE IISLSASANK LSNIQKQAKE
301: YAALIMEELD PDNAGFIMIE NLEMLLLQAP NQSVRMGDSR ILSQMLSQKL RPAKESNPLV RWSEKIKYFI LDNWQRLWIM MLWLGICGGL FTYKFIQYKN
401: KAAYGVMGYC VCVAKGGAET LKFNMALILL PVCRNTITWL RNKTKLGTVV PFDDSLNFHK VIASGIVVGV LLHAGAHLTC DFPRLIAADE DTYEPMEKYF
501: GDQPTSYWWF VKGVEGWTGI VMVVLMAIAF TLATPWFRRN KLNLPNFLKK LTGFNAFWYT HHLFIIVYAL LIVHGIKLYL TKIWYQKTTW MYLAVPILLY
601: ASERLLRAFR SSIKPVKMIK VAVYPGNVLS LHMTKPQGFK YKSGQFMLVN CRAVSPFEWH PFSITSAPGD DYLSVHIRTL GDWTRKLRTV FSEVCKPPTA
701: GKSGLLRADG GDGNLPFPKV LIDGPYGAPA QDYKKYDVVL LVGLGIGATP MISILKDIIN NMKGPDRDSD IENNNSNNNS KGFKTRKAYF YWVTREQGSF
801: EWFKGIMDEI SELDEEGIIE LHNYCTSVYE EGDARVALIA MLQSLQHAKN GVDVVSGTRV KSHFAKPNWR QVYKKIAVQH PGKRIGVFYC GMPGMIKELK
901: NLALDFSRKT TTKFDFHKEN F

Arabidopsis Description

RBOHDRespiratory burst oxidase homolog protein D [Source:UniProtKB/Swiss-Prot;Acc:Q9FIJ0]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.