Factsheet for VIT_02s0025g00510.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
plasma membrane 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	mitochondrion
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0063g01080.t01
VIT_06s0009g01840.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64060.1	VIT_03s0063g01080.t01	AT4G33950.1	19716822
AT1G64060.1	VIT_06s0009g01840.t01	AT5G21326.1	23162070

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032088	Potato	cytosol, nucleus, peroxisome	16.54	87.15
KRH41250	Soybean	cytosol	83.67	83.85
KRH59983	Soybean	cytosol, nucleus, plasma membrane	83.35	83.53
Solyc08g081690.2.1	Tomato	cytosol	83.46	81.72
KRH77593	Soybean	cytosol	80.06	81.45
KRH27880	Soybean	cytosol	79.96	81.34
GSMUA_Achr9P05450_001	Banana	mitochondrion	73.06	79.1
AT1G64060.1	Thale cress	cytosol	78.9	78.81
Bra027764.1-P	Field mustard	mitochondrion	78.69	78.27
CDY08347	Canola	mitochondrion	78.26	78.18
GSMUA_Achr6P31850_001	Banana	mitochondrion	73.81	78.03
CDY38202	Canola	mitochondrion	75.5	75.5
EES01429	Sorghum	mitochondrion	72.96	72.88
Zm00001d043543_P002	Maize	mitochondrion	72.75	72.75
HORVU3Hr1G069690.1	Barley	mitochondrion	9.33	72.73
Zm00001d038762_P001	Maize	plastid	72.75	72.36
TraesCS3B01G314000.2	Wheat	mitochondrion	71.79	71.72
KXG22389	Sorghum	mitochondrion	72.75	71.68
TraesCS3D01G279900.1	Wheat	mitochondrion	71.79	71.56
TraesCS1A01G347700.1	Wheat	mitochondrion	72.22	70.86
TraesCS1D01G350600.1	Wheat	mitochondrion	72.53	70.66
TraesCS1B01G362200.1	Wheat	mitochondrion	72.53	70.37
TraesCS3A01G280200.1	Wheat	mitochondrion	71.69	69.26
Os01t0734200-00	Rice	mitochondrion, nucleus	19.72	58.68
VIT_11s0016g00540.t01	Wine grape	cytosol, peroxisome, plastid	57.05	58.67
VIT_14s0060g02320.t01	Wine grape	cytosol	54.4	57.38
VIT_01s0150g00440.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	54.4	55.52
VIT_01s0150g00450.t01	Wine grape	cytosol	52.6	53.74
VIT_19s0014g02830.t01	Wine grape	cytosol	47.08	52.86
VIT_06s0004g03790.t01	Wine grape	nucleus	47.51	52.58
VIT_03s0063g00950.t01	Wine grape	extracellular, vacuole	9.86	43.66
VIT_15s0046g01900.t01	Wine grape	plasma membrane	14.32	19.48
VIT_17s0000g09160.t01	Wine grape	plasma membrane	14.42	19.35
VIT_16s0050g00980.t01	Wine grape	plasma membrane	14.53	19.19
VIT_15s0046g01920.t01	Wine grape	plasma membrane	15.16	19.07
VIT_12s0035g02150.t01	Wine grape	plasma membrane	14.0	17.96
VIT_16s0050g00990.t01	Wine grape	plastid	15.06	12.05

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	EntrezGene:100262101	wikigene:100262101	Gene3D:2.40.30.10	ProteinID:CCB58203
ProteinID:CCB58203.1	ncoils:Coil	InterPro:Cyt_b245_heavy_chain	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
UniProt:F6HUN7	InterPro:FAD-bd_8	EMBL:FN596251	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6
GO:GO:0002679	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165
GO:GO:0007231	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009058	GO:GO:0009628
GO:GO:0009719	GO:GO:0009723	GO:GO:0009987	GO:GO:0010119	GO:GO:0016020	GO:GO:0016021
GO:GO:0016174	GO:GO:0016491	GO:GO:0033500	GO:GO:0043069	GO:GO:0050664	GO:GO:0050665
GO:GO:0052542	GO:GO:0055114	GO:GO:0098869	InterPro:IPR002048	InterPro:IPR017927	EntrezGene:LOC100262101
wikigene:LOC100262101	InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030	PFAM:PF08414
PRINTS:PR00466	ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF66
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix	UniParc:UPI00015CD147
ArrayExpress:VIT_02s0025g00510	EnsemblPlantsGene:VIT_02s0025g00510	EnsemblPlants:VIT_02s0025g00510.t01	unigene:Vvi.19121	RefSeq:XP_002277529	RefSeq:XP_002277529.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:621826..631583

Molecular Weight (calculated)

106997.0 Da

IEP (calculated)

9.691

GRAVY (calculated)

-0.221

Length

943 amino acids

Sequence
(BLAST)

001: MRGLPKHERR WASDTVPGKA MSAGSSPATE SGSAEEFVEV TLDLQDDDTI VLRSVEPATV INVDQEGSAT PASASGSRSP TSIRRSSSSR LRQFSQELKA
101: EAVAKAKQFS QELKAELKRF SWSHGHGSRA MSSAVASVHS AGGPGSGFDT ALAARALRRQ RAQLDRTRSG AQKALRGLRF ISAKTNSVDA WNEVQSNFDK
201: LAKDGFLNRS DFAQCIGMKD SKEFALELFD ALSRRRRLKM DKITRDELYE FWSQIADQSF DSRLQIFFDM VDKNEDGRIA EEEVKEIIML SASANKLSRL
301: KEQAEEYAAL IMEELDPERL GYIELWQLET LLLQKDTYLN YSQALSYTSQ ALSQNLAGLR KRSSIQRMST KLLYYLQENW RRIWVICLWV LIMAGLFMWK
401: FFEYRQTKAF HVMGYCLLTA KGAAETLKFN MALILLPVCR NTITWLRSTK LGLFVPFDDN INFHKTIAGA IVVGVILHAG NHLACDFPRL EKATQINYND
501: YLIEFGSDKP TYADLVRGKE GVTGILMVLL MLIAFTLATR WFRRSLVKLP KPFDRITGFN AFWYSHHLFV IVYILLIIHG TYLYLVHKWY LKTTWMYLAV
601: PVCLYAGERT LRLFRSGFYA VRLLKVAIYP GNVLTLQMSK PPQFRYKSGQ YMFVQCPAVS PFEWHPFSIT SAPGDDFLSI HIRQLGDWTQ ELKRVFSEAC
701: EAPIAGKSGL LRADESTKKS LPKLLIDGPY GAPAQDYKKY DVLLLVGLGI GATPFISILK DLLNNIVKME EQDSVSDFSR ISDQSAGTTD SPSLNRISPK
801: RRKTLKTTNA YFYWVTREQG SFDWFKGVMN EVAELDQRGV IEMHNYLTSV YEEGDARSAL ITMVQALNHA KNGVDIVSGT RVRTHFARPN WKKVFSKTAT
901: KHANARIGVF YCGAPVLAKE LSRLCYEFNQ KGSTKFEFHK EHF

Best Arabidopsis Sequence Match ( AT1G64060.1 )
(BLAST)

001: MKPFSKNDRR RWSFDSVSAG KTAVGSASTS PGTEYSINGD QEFVEVTIDL QDDDTIVLRS VEPATAINVI GDISDDNTGI MTPVSISRSP TMKRTSSNRF
101: RQFSQELKAE AVAKAKQLSQ ELKRFSWSRS FSGNLTTTST AANQSGGAGG GLVNSALEAR ALRKQRAQLD RTRSSAQRAL RGLRFISNKQ KNVDGWNDVQ
201: SNFEKFEKNG YIYRSDFAQC IGMKDSKEFA LELFDALSRR RRLKVEKINH DELYEYWSQI NDESFDSRLQ IFFDIVDKNE DGRITEEEVK EIIMLSASAN
301: KLSRLKEQAE EYAALIMEEL DPERLGYIEL WQLETLLLQK DTYLNYSQAL SYTSQALSQN LQGLRGKSRI HRMSSDFVYI MQENWKRIWV LSLWIMIMIG
401: LFLWKFFQYK QKDAFHVMGY CLLTAKGAAE TLKFNMALIL FPVCRNTITW LRSTRLSYFV PFDDNINFHK TIAGAIVVAV ILHIGDHLAC DFPRIVRATE
501: YDYNRYLFHY FQTKQPTYFD LVKGPEGITG ILMVILMIIS FTLATRWFRR NLVKLPKPFD RLTGFNAFWY SHHLFVIVYI LLILHGIFLY FAKPWYVRTT
601: WMYLAVPVLL YGGERTLRYF RSGSYSVRLL KVAIYPGNVL TLQMSKPTQF RYKSGQYMFV QCPAVSPFEW HPFSITSAPE DDYISIHIRQ LGDWTQELKR
701: VFSEVCEPPV GGKSGLLRAD ETTKKSLPKL LIDGPYGAPA QDYRKYDVLL LVGLGIGATP FISILKDLLN NIVKMEEHAD SISDFSRSSE YSTGSNGDTP
801: RRKRILKTTN AYFYWVTREQ GSFDWFKGVM NEVAELDQRG VIEMHNYLTS VYEEGDARSA LITMVQALNH AKNGVDIVSG TRVRTHFARP NWKKVLTKLS
901: SKHCNARIGV FYCGVPVLGK ELSKLCNTFN QKGSTKFEFH KEHF

Arabidopsis Description

RBOHFRespiratory burst oxidase homolog protein F [Source:UniProtKB/Swiss-Prot;Acc:O48538]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.