Factsheet for TraesCS3D01G279900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plasma membrane
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G187300.1
TraesCS4B01G131000.1
TraesCS4D01G126200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64060.1	TraesCS4A01G187300.1	AT5G21326.1	23162070
AT1G64060.1	TraesCS4B01G131000.1	AT5G21326.1	23162070
AT1G64060.1	TraesCS4D01G126200.1	AT5G21326.1	23162070

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G314000.2	Wheat	mitochondrion	98.94	99.15
HORVU3Hr1G069780.1	Barley	mitochondrion	96.41	97.33
TraesCS3A01G280200.1	Wheat	mitochondrion	98.84	95.8
Os01t0734466-01	Rice	peroxisome, plasma membrane	51.59	91.04
EES01429	Sorghum	mitochondrion	87.74	87.92
Zm00001d043543_P002	Maize	mitochondrion	87.63	87.91
TraesCS1D01G350600.1	Wheat	mitochondrion	81.08	79.24
GSMUA_Achr9P05450_001	Banana	mitochondrion	71.04	77.15
GSMUA_Achr6P31850_001	Banana	mitochondrion	71.25	75.56
VIT_02s0025g00510.t01	Wine grape	cytosol	71.56	71.79
KRH41250	Soybean	cytosol	71.04	71.41
KRH59983	Soybean	cytosol, nucleus, plasma membrane	70.72	71.09
KRH27880	Soybean	cytosol	68.71	70.12
KRH77593	Soybean	cytosol	68.71	70.12
CDY08347	Canola	mitochondrion	69.13	69.28
Bra027764.1-P	Field mustard	mitochondrion	69.03	68.88
Solyc08g081690.2.1	Tomato	cytosol	69.98	68.74
PGSC0003DMT400032088	Potato	cytosol, nucleus, peroxisome	13.0	68.72
AT1G64060.1	Thale cress	cytosol	68.5	68.64
CDY38202	Canola	mitochondrion	65.96	66.17
TraesCS4D01G324800.1	Wheat	cytosol	52.64	54.25
TraesCS1D01G289300.2	Wheat	mitochondrion	45.45	53.75
TraesCS5D01G306400.1	Wheat	cytosol	51.9	53.54
TraesCS4D01G352200.3	Wheat	cytosol	47.89	53.48
TraesCS3D01G347900.2	Wheat	cytosol	47.15	52.66
TraesCS5D01G105900.1	Wheat	cytosol	47.99	52.49
TraesCS6D01G164500.1	Wheat	mitochondrion, plasma membrane	52.33	52.11
TraesCS5D01G222100.1	Wheat	mitochondrion	54.55	51.91
TraesCS3D01G187300.2	Wheat	cytosol	48.94	51.44
TraesCS1D01G284800.1	Wheat	plastid	46.51	44.04
TraesCS1D01G285000.1	Wheat	cytosol	40.27	41.96
TraesCS1D01G283600.1	Wheat	cytosol, peroxisome, plasma membrane	35.41	41.36
TraesCS1D01G284900.1	Wheat	cytosol	43.97	35.86
TraesCS2D01G393700.1	Wheat	plasma membrane	14.16	18.56
TraesCS2D01G311100.1	Wheat	plasma membrane	14.16	17.94

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	Gene3D:2.40.30.10	ncoils:Coil	InterPro:Cyt_b245_heavy_chain	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6
GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016491	GO:GO:0050664	GO:GO:0055114
InterPro:IPR002048	InterPro:IPR017927	InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030
PFAM:PF08414	PRINTS:PR00466	ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972
PANTHER:PTHR11972:SF66	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS3D01G279900	EnsemblPlants:TraesCS3D01G279900.1	TIGR:cd00051	TIGR:cd06186	SEG:seg	:

Description

No Description!

Coordinates

chr3D:-:388331394..388337911

Molecular Weight (calculated)

106859.0 Da

IEP (calculated)

9.558

GRAVY (calculated)

-0.202

Length

946 amino acids

Sequence
(BLAST)

001: MRGGASAGHP RWSSAGTTPR SLSTGSSPRG SEPASEDGEE LVEVTLDLQD DDTIVLRSVE PAAAALGSGS GALRLPVPAR GELADGGCGA SSSSSRSPSM
101: RRTSSYRLLQ LSQELMAGAR HFSHDLTKRF SRSHSHSRDE AHHHHQQPSS GIESALAARA ARRQRAQLDR TRSGAHRALR GLRFISSNKA SNAWREVQAN
201: FDRLARDGYL SRSDFAECIG MTESKEFALE LFDTLSRRRQ MKLDTISKEE LREIWQQITD NSFDSRLQIF FDMVDKNADG RIGEAEVKEI IMLSASANKL
301: SRLKEQAEEY AALIMEELDP EELGYIELWQ LETLLLQKDT YVNYSQALSY TSQALSQNLA LRKKGSIRKI GNSLIYYLED NWKRLWVLAL WIGIMAGLFT
401: WKFIQYRERY VFKVMGYCVT TAKGAAETLK LNMAIILLPV CRNTITWLRN TRAARVLPFD DNINFHKTIA AAIVVGVILH AGNHLVCDFP RLIRSSEEMY
501: APLGIYFGET KPTYLALIKG VEGVTGIIMV VCMIIAFTLA TRWFRRSLVK LPKPFDKLTG FNAFWYSHHL FAIVYVALIV HGQFVYLIRV WYRKSTWMYL
601: AVPVCLYLGE RILRFFRSGS YAVRLLKVAI YPGNVLTLQM TKPATFRYKS GQYMFVQCPA VSPFEWHPFS ITSAPGDEYL SIHVRQLGDW TRELKRVFSA
701: ACEPPVSGKS GLLRADETTK KTLPKLLIDG PYGSPAQDYG KYDVLLLVGL GIGATPFISI LKDLLNNIIK MEEEEDTSTD LYPPVGRNKP HVDLGTLMRV
801: TTRPRKVLKT TNAYFYWVTR EQGSFDWFKG VMNEIADMDQ RNIIEMHNYL TSVYEEGDAR SALITMLQAL NHAKNGVDVV SGTKVRTHFA RPNWKKVLAK
901: IASKHPYAKI GVFYCGAPVL AQELAKLCHE FNGKCTTKFE FHKEYF

Best Arabidopsis Sequence Match ( AT1G64060.1 )
(BLAST)

001: MKPFSKNDRR RWSFDSVSAG KTAVGSASTS PGTEYSINGD QEFVEVTIDL QDDDTIVLRS VEPATAINVI GDISDDNTGI MTPVSISRSP TMKRTSSNRF
101: RQFSQELKAE AVAKAKQLSQ ELKRFSWSRS FSGNLTTTST AANQSGGAGG GLVNSALEAR ALRKQRAQLD RTRSSAQRAL RGLRFISNKQ KNVDGWNDVQ
201: SNFEKFEKNG YIYRSDFAQC IGMKDSKEFA LELFDALSRR RRLKVEKINH DELYEYWSQI NDESFDSRLQ IFFDIVDKNE DGRITEEEVK EIIMLSASAN
301: KLSRLKEQAE EYAALIMEEL DPERLGYIEL WQLETLLLQK DTYLNYSQAL SYTSQALSQN LQGLRGKSRI HRMSSDFVYI MQENWKRIWV LSLWIMIMIG
401: LFLWKFFQYK QKDAFHVMGY CLLTAKGAAE TLKFNMALIL FPVCRNTITW LRSTRLSYFV PFDDNINFHK TIAGAIVVAV ILHIGDHLAC DFPRIVRATE
501: YDYNRYLFHY FQTKQPTYFD LVKGPEGITG ILMVILMIIS FTLATRWFRR NLVKLPKPFD RLTGFNAFWY SHHLFVIVYI LLILHGIFLY FAKPWYVRTT
601: WMYLAVPVLL YGGERTLRYF RSGSYSVRLL KVAIYPGNVL TLQMSKPTQF RYKSGQYMFV QCPAVSPFEW HPFSITSAPE DDYISIHIRQ LGDWTQELKR
701: VFSEVCEPPV GGKSGLLRAD ETTKKSLPKL LIDGPYGAPA QDYRKYDVLL LVGLGIGATP FISILKDLLN NIVKMEEHAD SISDFSRSSE YSTGSNGDTP
801: RRKRILKTTN AYFYWVTREQ GSFDWFKGVM NEVAELDQRG VIEMHNYLTS VYEEGDARSA LITMVQALNH AKNGVDIVSG TRVRTHFARP NWKKVLTKLS
901: SKHCNARIGV FYCGVPVLGK ELSKLCNTFN QKGSTKFEFH KEHF

Arabidopsis Description

RBOHFRespiratory burst oxidase homolog protein F [Source:UniProtKB/Swiss-Prot;Acc:O48538]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.