Factsheet for TraesCS3B01G314000.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, peroxisome, plasma membrane
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G187300.1
TraesCS4B01G131000.1
TraesCS4D01G126200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64060.1	TraesCS4A01G187300.1	AT5G21326.1	23162070
AT1G64060.1	TraesCS4B01G131000.1	AT5G21326.1	23162070
AT1G64060.1	TraesCS4D01G126200.1	AT5G21326.1	23162070

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G279900.1	Wheat	mitochondrion	99.15	98.94
HORVU3Hr1G069780.1	Barley	mitochondrion	96.4	97.12
TraesCS3A01G280200.1	Wheat	mitochondrion	98.52	95.29
Os01t0734466-01	Rice	peroxisome, plasma membrane	51.59	90.86
EES01429	Sorghum	mitochondrion	87.71	87.71
Zm00001d043543_P002	Maize	mitochondrion	87.61	87.7
TraesCS1B01G362200.1	Wheat	mitochondrion	81.14	78.81
GSMUA_Achr9P05450_001	Banana	mitochondrion	71.08	77.04
GSMUA_Achr6P31850_001	Banana	mitochondrion	71.29	75.45
VIT_02s0025g00510.t01	Wine grape	cytosol	71.72	71.79
KRH41250	Soybean	cytosol	71.19	71.41
KRH59983	Soybean	cytosol, nucleus, plasma membrane	70.87	71.09
KRH27880	Soybean	cytosol	68.86	70.12
KRH77593	Soybean	cytosol	68.86	70.12
CDY08347	Canola	mitochondrion	69.49	69.49
Bra027764.1-P	Field mustard	mitochondrion	69.28	68.99
AT1G64060.1	Thale cress	cytosol	68.75	68.75
Solyc08g081690.2.1	Tomato	cytosol	70.13	68.74
PGSC0003DMT400032088	Potato	cytosol, nucleus, peroxisome	13.03	68.72
CDY38202	Canola	mitochondrion	66.21	66.28
TraesCS4B01G327800.2	Wheat	cytosol	52.97	54.53
TraesCS4B01G358800.1	Wheat	cytosol	48.31	53.84
TraesCS5B01G299000.1	Wheat	cytosol	52.01	53.49
TraesCS3B01G386600.1	Wheat	cytosol	47.46	52.71
TraesCS5B01G212100.1	Wheat	mitochondrion	54.66	52.39
TraesCS5B01G099700.1	Wheat	cytosol	48.31	52.23
TraesCS6B01G205000.1	Wheat	mitochondrion	52.33	51.62
TraesCS3B01G212900.5	Wheat	cytosol	49.05	51.44
TraesCS1B01G295100.1	Wheat	plasma membrane	36.12	49.93
TraesCS1B01G300000.2	Wheat	mitochondrion	45.76	48.54
TraesCS1B01G295300.1	Wheat	cytosol	41.53	46.01
TraesCS1B01G293900.1	Wheat	cytosol, peroxisome, plasma membrane	35.17	41.04
TraesCS1B01G295200.1	Wheat	cytosol	43.64	33.69
TraesCS2B01G414300.1	Wheat	plasma membrane	14.19	18.53
TraesCS2B01G329600.1	Wheat	plasma membrane	14.3	18.07

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	Gene3D:2.40.30.10	ncoils:Coil	InterPro:Cyt_b245_heavy_chain	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6
GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016491	GO:GO:0050664	GO:GO:0055114
InterPro:IPR002048	InterPro:IPR017927	InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030
PFAM:PF08414	PRINTS:PR00466	ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972
PANTHER:PTHR11972:SF66	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS3B01G314000	EnsemblPlants:TraesCS3B01G314000.2	TIGR:cd00051	TIGR:cd06186	SEG:seg	:

Description

No Description!

Coordinates

chr3B:-:504980347..504986707

Molecular Weight (calculated)

106670.0 Da

IEP (calculated)

9.517

GRAVY (calculated)

-0.212

Length

944 amino acids

Sequence
(BLAST)

001: MRGGGHPRWG SAGTTPRSLS TGSSPRGSEP CSEDGEELVE VTLDLQDDDT IVLRSVEPAA AAASGSGSGA LRLPVPARGE LADGGCGASS SSSRSPSMRR
101: TSSYRLVQLS QELMAGARHF SHDLTKRFSR SHSHSRDEGH HHQQQPSSGI ESALAARAAR RQRAQLDRTR SGAHRALRGL RFISSNKASN AWREVQANFD
201: RLARDGYLSR SDFAECIGMT ESKEFALELF DTLSRRRQMK LDTISKEELR EIWQQITDNS FDSRLQIFFD MVDKNADGRI GEAEVKEIIM LSASANKLSR
301: LKEQAEEYAA LIMEELDPEE LGYIELWQLE TLLLQKDTYV NYSQALSYTS QALSQNLALR KKGSIRKIGN SLIYYLEDNW KRLWVLALWI GIMAGLFTWK
401: FIQYRERYVF KVMGYCVTTA KGAAETLKLN MAIILLPVCR NTITWLRNTR AARVLPFDDN INFHKTIAAA IVVGVILHAG NHLVCDFPRL IRSSEEMYTP
501: LGIYFGETKP TYLALIKGVE GVTGIIMVVC MIIAFTLATR WFRRSLVKLP KPFDKLTGFN AFWYSHHLFA IVYVALIVHG QFVYLIRVWY RKSTWMYLAV
601: PVCLYLGERI LRFFRSGSYA VRLLKVAIYP GNVLTLQMTK PATFRYKSGQ YMFVQCPAVS PFEWHPFSIT SAPGDEYLSI HVRQLGDWTR ELKRVFSAAC
701: EPPVSGKSGL LRADETTKKT LPKLLIDGPY GSPAQDYGKY DVLLLVGLGI GATPFISILK DLLNNIIKME EEEDTSTDLY PPVGRNKPHV DLGTLMRVTT
801: RPRKVLKTTN AYFYWVTREQ GSFDWFKGVM NEIADMDQRN IIEMHNYLTS VYEEGDARSA LITMLQALNH AKNGVDVVSG TKVRTHFARP NWKKVLAKIA
901: SKHPYAKIGV FYCGAPVLAQ ELAKLCHEFN GKCTTKFEFH KEYF

Best Arabidopsis Sequence Match ( AT1G64060.1 )
(BLAST)

001: MKPFSKNDRR RWSFDSVSAG KTAVGSASTS PGTEYSINGD QEFVEVTIDL QDDDTIVLRS VEPATAINVI GDISDDNTGI MTPVSISRSP TMKRTSSNRF
101: RQFSQELKAE AVAKAKQLSQ ELKRFSWSRS FSGNLTTTST AANQSGGAGG GLVNSALEAR ALRKQRAQLD RTRSSAQRAL RGLRFISNKQ KNVDGWNDVQ
201: SNFEKFEKNG YIYRSDFAQC IGMKDSKEFA LELFDALSRR RRLKVEKINH DELYEYWSQI NDESFDSRLQ IFFDIVDKNE DGRITEEEVK EIIMLSASAN
301: KLSRLKEQAE EYAALIMEEL DPERLGYIEL WQLETLLLQK DTYLNYSQAL SYTSQALSQN LQGLRGKSRI HRMSSDFVYI MQENWKRIWV LSLWIMIMIG
401: LFLWKFFQYK QKDAFHVMGY CLLTAKGAAE TLKFNMALIL FPVCRNTITW LRSTRLSYFV PFDDNINFHK TIAGAIVVAV ILHIGDHLAC DFPRIVRATE
501: YDYNRYLFHY FQTKQPTYFD LVKGPEGITG ILMVILMIIS FTLATRWFRR NLVKLPKPFD RLTGFNAFWY SHHLFVIVYI LLILHGIFLY FAKPWYVRTT
601: WMYLAVPVLL YGGERTLRYF RSGSYSVRLL KVAIYPGNVL TLQMSKPTQF RYKSGQYMFV QCPAVSPFEW HPFSITSAPE DDYISIHIRQ LGDWTQELKR
701: VFSEVCEPPV GGKSGLLRAD ETTKKSLPKL LIDGPYGAPA QDYRKYDVLL LVGLGIGATP FISILKDLLN NIVKMEEHAD SISDFSRSSE YSTGSNGDTP
801: RRKRILKTTN AYFYWVTREQ GSFDWFKGVM NEVAELDQRG VIEMHNYLTS VYEEGDARSA LITMVQALNH AKNGVDIVSG TRVRTHFARP NWKKVLTKLS
901: SKHCNARIGV FYCGVPVLGK ELSKLCNTFN QKGSTKFEFH KEHF

Arabidopsis Description

RBOHFRespiratory burst oxidase homolog protein F [Source:UniProtKB/Swiss-Prot;Acc:O48538]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.