Factsheet for TraesCS1B01G300000.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G289300.2	Wheat	mitochondrion	88.43	98.38
TraesCS1A01G290700.2	Wheat	mitochondrion	88.31	98.25
Os05t0465800-01	Rice	plasma membrane	74.38	80.83
Zm00001d009349_P004	Maize	plastid	74.61	80.78
KXG32613	Sorghum	cytosol, plastid	74.94	80.65
HORVU1Hr1G071340.13	Barley	mitochondrion, peroxisome, plastid	89.21	78.54
Zm00001d040974_P002	Maize	cytosol, peroxisome, plasma membrane, plastid	74.04	78.27
TraesCS3B01G386600.1	Wheat	cytosol	67.75	70.94
GSMUA_AchrUn_...	Banana	cytosol	18.09	70.61
GSMUA_AchrUn_...	Banana	cytosol	31.69	64.38
PGSC0003DMT400040179	Potato	cytosol	53.48	61.34
Solyc06g075570.1.1	Tomato	cytosol	55.62	59.64
VIT_06s0004g03790.t01	Wine grape	nucleus	56.74	59.27
CDX86059	Canola	peroxisome, plasma membrane, plastid	25.84	58.82
PGSC0003DMT400078138	Potato	cytosol, nucleus, plastid	55.06	58.75
Solyc11g072800.1.1	Tomato	cytosol	53.37	58.21
KRH49079	Soybean	cytosol	55.17	57.16
AT5G60010.1	Thale cress	cytosol	53.03	53.27
Bra020270.1-P	Field mustard	cytosol	52.58	52.94
CDY09233	Canola	cytosol	52.58	52.94
Bra038274.1-P	Field mustard	cytosol	49.55	50.46
AT3G45810.1	Thale cress	cytosol	51.35	50.11
TraesCS4B01G358800.1	Wheat	cytosol	46.4	48.76
TraesCS1B01G295100.1	Wheat	plasma membrane	36.52	47.58
TraesCS3B01G212900.5	Wheat	cytosol	47.08	46.56
CDX99140	Canola	cytosol, peroxisome, plasma membrane	43.82	46.21
TraesCS4B01G327800.2	Wheat	cytosol	47.42	46.02
TraesCS3B01G314000.2	Wheat	mitochondrion	48.54	45.76
TraesCS5B01G299000.1	Wheat	cytosol	46.63	45.21
TraesCS1B01G362200.1	Wheat	mitochondrion	49.1	44.96
TraesCS5B01G099700.1	Wheat	cytosol	43.93	44.79
TraesCS6B01G205000.1	Wheat	mitochondrion	45.84	42.63
TraesCS1B01G295300.1	Wheat	cytosol	40.79	42.61
TraesCS5B01G212100.1	Wheat	mitochondrion	47.08	42.54
TraesCS1B01G293900.1	Wheat	cytosol, peroxisome, plasma membrane	35.06	38.57
TraesCS1B01G295200.1	Wheat	cytosol	41.69	30.34
TraesCS2B01G329600.1	Wheat	plasma membrane	13.48	16.06
TraesCS2B01G414300.1	Wheat	plasma membrane	12.92	15.91

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	InterPro:Cyt_b245_heavy_chain	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6
GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016491	GO:GO:0050664	GO:GO:0055114
InterPro:IPR002048	InterPro:IPR017927	InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030
PFAM:PF08414	PRINTS:PR00466	ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972
PANTHER:PTHR11972:SF54	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS1B01G300000	EnsemblPlants:TraesCS1B01G300000.2	TIGR:cd06186	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:+:520781259..520785452

Molecular Weight (calculated)

100563.0 Da

IEP (calculated)

9.437

GRAVY (calculated)

-0.219

Length

890 amino acids

Sequence
(BLAST)

001: MQVQRLKLAR PLSATRATVL LAFSSPPPLV SHLPNLLRPP AASHWAWAVV PSPVQRAMAS SSEGYVDVPL GGEHQQPPPQ PQPHPYSAPT MRKQPSRLTS
101: GMKRLASRVT SFRVPDMGLR RTHSSAQPAL KGLRFLDKTA AGKDGWKSVE KRFDEMSADG RLHQDNFAKC IGMADSKEFA SEVFAAMARR RKIDPEQGLT
201: KEQLHECWEE MSDNNFDARL RIFFDMCDKN GDGKLTEEEV KEIIVLSAGA NKLAKLKKHA ATYASLIMEE LDPDARGYIE IWQLEKLLRK MVMEEGSQDQ
301: MDQASTSLAK TMVPSSHRSP MQKQIHETVD FIHENWKRIW FLTLWGIANI ALFIFKFIQY RNRAVFEVMG YCVCIAKGAA ETTKLNMALI LLPVCRNTLT
401: ALRSTALSAV IPFDDNINFH KVIAVGIAIG AGMHTVVHLT CDFPRLVSCP SDKFQEKLGP FFNYVQPTWG TLLASTPGWT GILLVLIMSF SFTLATHSFR
501: RSVVKLPSPF HHLAGFNSFW YAHHLLVVAY ILLVMHSYYL FLTKPWYKKT GWMYIAVPVI FYASERATRR VREKNYGVTV IKAAIYPGNV LSLYMKKPSS
601: FKYKSGMYLF VKCPDVSPFE WHPFSITSAP GDDYLSVHIR TLGDWTTELR NLFGKACEEE VNSKKATLSR LETTVIAEGA EDNTRFPKIF VDGPFGAPAQ
701: NYKKYDILFL IGLGIGATPF ISILKDLLHN IKSNNEQQSM NDEEAGSSFK SNGPSRAYFY WVTREQGSFE WFKGVMNEVA ECDSDNAIEM HNYLTSVYEE
801: GDARSALIAM VQSLQHAKNG VDIVSGSKIR THFARPNWRK VYSDLANTHK NARIGVFYCG SPTLTKTLRE LAIEFSHTTT TRFHFHKENF

Best Arabidopsis Sequence Match ( AT5G60010.1 )
(BLAST)

001: MKSNTPTEDS TKWMLESVEI DSMGESSSKE PEINLNKNEG GLKKNASRNL GVGSIIRTLS VSNWRKSGNL GSPSTRKSGN LGPPTNAVPK KTGPQRVERT
101: TSSAARGLQS LRFLDRTVTG RERDAWRSIE NRFNQFSVDG KLPKEKFGVC IGMGDTMEFA AEVYEALGRR RQIETENGID KEQLKLFWED MIKKDLDCRL
201: QIFFDMCDKN GDGKLTEEEV KEVIVLSASA NRLGNLKKNA AAYASLIMEE LDPDHKGYIE MWQLEILLTG MVTNADTEKM KKSQTLTRAM IPERYRTPMS
301: KYVSVTAELM HENWKKLWVL ALWAIINVYL FMWKYEEFMR NPLYNITGRC VCAAKGAAET LKLNMALILV PVCRKTLTIL RSTFLNRVVP FDDNINFHKV
401: IAYMIAFQAL LHTALHIFCN YPRLSSCSYD VFLTYAGAAL GNTQPSYLGL MLTSVSITGV LMIFFMGFSF TLAMHYFRRN IVKLPKPFNV LAGFNAFWYA
501: HHLLVLAYIL LIIHGYYLII EKPWYQKTTW MYLAVPMLFY ASERLFSRLL QEHSHRVNVI KAIVYSGNVL ALYVTKPPGF KYKSGMYMFV KCPDLSKFEW
601: HPFSITSAPG DDYLSVHIRA LGDWTTELRS RFAKTCEPTQ AAAKPKPNSL MRMETRAAGV NPHIEESQVL FPKIFIKGPY GAPAQNYQKF DILLLVGLGI
701: GATPFISILK DMLNHLKPGI PRSGQKYEGS VGGESIGGDS VSGGGGKKFP QRAYFFWVTR EQASFDWFKG VMDDIAEYDK THVIEMHNYL TSMYEAGDAR
801: SALIAMVQKL QHAKNGVDIV SESRIRTHFA RPNWRKVFSE LSSKHEACRI GVFYCGSPTL VRPLKELCQE FSLESSTRFT FHKENF

Arabidopsis Description

RBOHHPutative respiratory burst oxidase homolog protein H [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.