Factsheet for VIT_06s0004g03790.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
nucleus 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, peroxisome	24.53	70.85
Solyc06g075570.1.1	Tomato	cytosol	68.31	70.12
PGSC0003DMT400040179	Potato	cytosol	63.62	69.85
PGSC0003DMT400078138	Potato	cytosol, nucleus, plastid	68.08	69.54
GSMUA_Achr5P29250_001	Banana	cytosol	57.51	67.87
Solyc11g072800.1.1	Tomato	cytosol	63.73	66.54
KRH49079	Soybean	cytosol	65.02	64.49
CDX86059	Canola	peroxisome, plasma membrane, plastid	29.11	63.43
Os01t0835500-01	Rice	cytosol	62.68	63.35
TraesCS1D01G289300.2	Wheat	mitochondrion	59.04	62.88
TraesCS1A01G290700.2	Wheat	mitochondrion	58.92	62.75
Zm00001d009349_P004	Maize	plastid	59.98	62.17
Os05t0465800-01	Rice	plasma membrane	59.62	62.03
TraesCS3D01G347900.2	Wheat	cytosol	61.5	61.87
OQU87817	Sorghum	cytosol	61.85	61.71
TraesCS3B01G386600.1	Wheat	cytosol	61.5	61.65
TraesCS3A01G354200.2	Wheat	cytosol	61.38	61.46
GSMUA_AchrUn_...	Banana	cytosol	31.57	61.42
KXG32613	Sorghum	cytosol, plastid	59.39	61.19
Zm00001d040974_P002	Maize	cytosol, peroxisome, plasma membrane, plastid	60.09	60.81
HORVU3Hr1G087210.4	Barley	peroxisome, plastid	61.74	60.74
GSMUA_Achr10P...	Banana	cytosol	60.09	60.66
GSMUA_AchrUn_...	Banana	cytosol	16.2	60.53
GSMUA_Achr11P...	Banana	mitochondrion	36.85	59.92
Zm00001d042961_P002	Maize	plasma membrane	61.74	59.57
CDY09233	Canola	cytosol	60.68	58.48
Bra020270.1-P	Field mustard	cytosol	60.68	58.48
AT5G60010.1	Thale cress	cytosol	60.33	58.01
TraesCS1B01G300000.2	Wheat	mitochondrion	59.27	56.74
Bra038274.1-P	Field mustard	cytosol	58.1	56.64
AT3G45810.1	Thale cress	cytosol	59.74	55.81
CDX99140	Canola	cytosol, peroxisome, plasma membrane	51.17	51.66
HORVU1Hr1G071340.13	Barley	mitochondrion, peroxisome, plastid	60.45	50.94
VIT_02s0025g00510.t01	Wine grape	cytosol	52.58	47.51
VIT_14s0060g02320.t01	Wine grape	cytosol	48.71	46.42
VIT_11s0016g00540.t01	Wine grape	cytosol, peroxisome, plastid	49.41	45.91
VIT_19s0014g02830.t01	Wine grape	cytosol	44.72	45.36
VIT_01s0150g00440.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	49.06	45.24
VIT_01s0150g00450.t01	Wine grape	cytosol	47.54	43.88
VIT_03s0063g00950.t01	Wine grape	extracellular, vacuole	7.51	30.05
VIT_17s0000g09160.t01	Wine grape	plasma membrane	15.38	18.63
VIT_15s0046g01900.t01	Wine grape	plasma membrane	14.32	17.6
VIT_12s0035g02150.t01	Wine grape	plasma membrane	15.14	17.55
VIT_16s0050g00980.t01	Wine grape	plasma membrane	14.55	17.37
VIT_15s0046g01920.t01	Wine grape	plasma membrane	14.91	16.93
VIT_16s0050g00990.t01	Wine grape	plastid	14.91	10.78

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	EntrezGene:100265669	wikigene:100265669	Gene3D:2.40.30.10	Gene3D:3.40.50.80
ProteinID:CBI16221	ProteinID:CBI16221.3	InterPro:Cyt_b245_heavy_chain	UniProt:D7SKP3	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	InterPro:FAD-bd_8	EMBL:FN594951	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6
GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0050664	GO:GO:0055114	GO:GO:0098869	InterPro:IPR002048	InterPro:IPR017927	EntrezGene:LOC100265669
wikigene:LOC100265669	InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030	PFAM:PF08414
PRINTS:PR00466	ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF54
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix	UniParc:UPI0001BE0F3E
ArrayExpress:VIT_06s0004g03790	EnsemblPlantsGene:VIT_06s0004g03790	EnsemblPlants:VIT_06s0004g03790.t01	RefSeq:XP_002281695	RefSeq:XP_002281695.1	SEG:seg

Description

No Description!

Coordinates

chr6:-:4762503..4766209

Molecular Weight (calculated)

97146.4 Da

IEP (calculated)

9.415

GRAVY (calculated)

-0.283

Length

852 amino acids

Sequence
(BLAST)

001: MAGIMEPGEN DSTKWMLQIV DIDNMEEVPI NDGDQVRSST AESQNGETSL NESESIVKRR NEAQGKVPGL GRSTSGAARG LNSLRFLDRT TTGKEGDAWK
101: PVQKRFKQHA VEGKLYKEKF GVCIGMGDSK EFAGELFDAL ARRRKINTEN GISEEELRQF WEDMTDRDLD SRLQIFFDMC DKNGDGKLSE DEVKEVIMLS
201: ASTNKLSNLK QHAAEYAALI MEELDPDNHG HIEMWQLETL LRGMVGGSEE GPKFNKRAQT LSRTMIPKKY RTPVSKHLSK TQEFLQDNWK RVWLVTLWLS
301: INLTLFIWKF NQYKTKKAFK IMGYCLCTAK GAAETLKFNM ALILIPVCRR TLTKLRSTFL SALIPFDDNI NFHKLIALAI AIGVFIHTIM HVTCDFPRLI
401: SCPPRKFRRI LGPQFNFKQP TYGDLLESIT GTTGILMIVM MSFSFTLATH SFRRNVIKLP WPFHHLAGFN AFWYAHHLLV LVYVLLVIHG YFLILSRNWY
501: MKTTWMYVMV PVLFYASERT LTSVHEHNHQ VGIIKATIYT GNVLALYMTK PPGFKYKSGM YLFVKCPDVS NFEWHPFSIT SAPGNDYLSV HIRTLGDWTT
601: EIKNRFAKVC EPPSAQPKKG ALMRMETRAA TETGDVQAGF PRIIIKGPYG APAQNYKKYD ILLLIGLGIG ATPFISIMKD LLNDIKPNDS VSQKASYVSK
701: FDSSYSDAHE ATKKGPERVY FYWVTREQGS FEWFKGVMND VAEYDHGHMI EMHNYLTSMY EEGDARSALI AMVQSLQHAK NGVDVVSESR IKAHFARPNW
801: KKVFSHLAST HQSAKIGVFY CGSPTLAKPL RQLCKEFSLN SSTRFHFHKE NF

Best Arabidopsis Sequence Match ( AT5G60010.1 )
(BLAST)

001: MKSNTPTEDS TKWMLESVEI DSMGESSSKE PEINLNKNEG GLKKNASRNL GVGSIIRTLS VSNWRKSGNL GSPSTRKSGN LGPPTNAVPK KTGPQRVERT
101: TSSAARGLQS LRFLDRTVTG RERDAWRSIE NRFNQFSVDG KLPKEKFGVC IGMGDTMEFA AEVYEALGRR RQIETENGID KEQLKLFWED MIKKDLDCRL
201: QIFFDMCDKN GDGKLTEEEV KEVIVLSASA NRLGNLKKNA AAYASLIMEE LDPDHKGYIE MWQLEILLTG MVTNADTEKM KKSQTLTRAM IPERYRTPMS
301: KYVSVTAELM HENWKKLWVL ALWAIINVYL FMWKYEEFMR NPLYNITGRC VCAAKGAAET LKLNMALILV PVCRKTLTIL RSTFLNRVVP FDDNINFHKV
401: IAYMIAFQAL LHTALHIFCN YPRLSSCSYD VFLTYAGAAL GNTQPSYLGL MLTSVSITGV LMIFFMGFSF TLAMHYFRRN IVKLPKPFNV LAGFNAFWYA
501: HHLLVLAYIL LIIHGYYLII EKPWYQKTTW MYLAVPMLFY ASERLFSRLL QEHSHRVNVI KAIVYSGNVL ALYVTKPPGF KYKSGMYMFV KCPDLSKFEW
601: HPFSITSAPG DDYLSVHIRA LGDWTTELRS RFAKTCEPTQ AAAKPKPNSL MRMETRAAGV NPHIEESQVL FPKIFIKGPY GAPAQNYQKF DILLLVGLGI
701: GATPFISILK DMLNHLKPGI PRSGQKYEGS VGGESIGGDS VSGGGGKKFP QRAYFFWVTR EQASFDWFKG VMDDIAEYDK THVIEMHNYL TSMYEAGDAR
801: SALIAMVQKL QHAKNGVDIV SESRIRTHFA RPNWRKVFSE LSSKHEACRI GVFYCGSPTL VRPLKELCQE FSLESSTRFT FHKENF

Arabidopsis Description

RBOHHPutative respiratory burst oxidase homolog protein H [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.