CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69016
CDX75391
CDX92400
CDY09107
CDY16600
CDY72554

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64060.1	CDX69016	AT4G33950.1	19716822
AT1G64060.1	CDX75391	AT4G33950.1	19716822
AT1G64060.1	CDY72554	AT4G33950.1	19716822
AT1G64060.1	CDX92400	AT5G21326.1	23162070
AT1G64060.1	CDY09107	AT5G21326.1	23162070
AT1G64060.1	CDY16600	AT5G21326.1	23162070

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38202	Canola	mitochondrion	95.76	95.86
AT1G64060.1	Thale cress	cytosol	93.11	93.11
VIT_02s0025g00510.t01	Wine grape	cytosol	78.18	78.26
PGSC0003DMT400032088	Potato	cytosol, nucleus, peroxisome	14.72	77.65
KRH41250	Soybean	cytosol	76.91	77.15
KRH27880	Soybean	cytosol	75.74	77.13
KRH77593	Soybean	cytosol	75.74	77.13
KRH59983	Soybean	cytosol, nucleus, plasma membrane	76.8	77.05
Solyc08g081690.2.1	Tomato	cytosol	78.28	76.74
GSMUA_Achr9P05450_001	Banana	mitochondrion	68.01	73.71
GSMUA_Achr6P31850_001	Banana	mitochondrion	68.75	72.76
EES01429	Sorghum	mitochondrion	70.13	70.13
Zm00001d043543_P002	Maize	mitochondrion	69.92	69.99
TraesCS3B01G314000.2	Wheat	mitochondrion	69.49	69.49
Zm00001d038762_P001	Maize	plastid	69.6	69.3
TraesCS3D01G279900.1	Wheat	mitochondrion	69.28	69.13
KXG22389	Sorghum	mitochondrion	69.49	68.55
HORVU3Hr1G069690.1	Barley	mitochondrion	8.69	67.77
TraesCS3A01G280200.1	Wheat	mitochondrion	69.28	67.01
TraesCS1A01G347700.1	Wheat	mitochondrion	68.01	66.81
TraesCS1D01G350600.1	Wheat	mitochondrion	68.22	66.53
TraesCS1B01G362200.1	Wheat	mitochondrion	68.22	66.26
CDY65632	Canola	nucleus, peroxisome	9.43	61.81
CDY22644	Canola	plasma membrane	36.86	60.42
CDY63433	Canola	cytosol	56.25	56.07
CDY25278	Canola	cytosol, peroxisome, plasma membrane	55.4	56.06
CDY35764	Canola	cytosol, nucleus, plasma membrane	51.38	53.95
CDY06348	Canola	cytosol	46.61	53.92
CDY45918	Canola	cytosol, nucleus, plasma membrane, plastid	52.01	53.31
CDX86059	Canola	peroxisome, plasma membrane, plastid	22.03	53.2
CDX85316	Canola	cytosol, nucleus, plasma membrane	51.59	52.82
CDX86335	Canola	cytosol, nucleus, plasma membrane	51.48	52.71
CDY21676	Canola	cytosol, peroxisome, plasma membrane, plastid	52.01	52.57
Os01t0734200-00	Rice	mitochondrion, nucleus	17.58	52.37
CDX81920	Canola	cytosol, nucleus, plasma membrane, plastid	51.59	52.14
CDY32647	Canola	cytosol, peroxisome, plasma membrane	50.21	52.09
CDY38845	Canola	cytosol, peroxisome, plasma membrane	50.21	52.09
CDX92671	Canola	cytosol	41.21	51.45
CDX70035	Canola	cytosol	46.72	49.77
CDY08237	Canola	cytosol, peroxisome, plasma membrane	27.97	49.62
CDY26109	Canola	mitochondrion	30.93	49.49
CDY11053	Canola	cytosol, nucleus, plasma membrane	43.64	49.46
CDX92674	Canola	mitochondrion	18.11	49.14
CDX81049	Canola	cytosol	44.49	49.01
CDX98976	Canola	cytosol	46.82	48.68
CDX78290	Canola	cytosol	43.96	48.59
CDY41031	Canola	cytosol, peroxisome, plasma membrane	52.22	48.48
CDX81047	Canola	cytosol	43.54	48.24
CDY09233	Canola	cytosol	44.6	47.62
CDY26689	Canola	cytosol, peroxisome, plasma membrane	50.74	47.1
CDY11054	Canola	cytosol, nucleus, plasma membrane	40.25	46.57
CDX92675	Canola	cytosol	17.9	43.78
CDX99140	Canola	cytosol, peroxisome, plasma membrane	37.39	41.82
CDY34341	Canola	nucleus	9.22	33.59
CDX86058	Canola	cytosol	12.18	33.24
CDY22645	Canola	cytosol	7.2	30.09
CDY70539	Canola	nucleus	9.75	30.07
CDX68510	Canola	extracellular, mitochondrion, plasma membrane, plastid	2.97	22.05
CDX88061	Canola	plasma membrane	14.41	20.54
CDY44266	Canola	plasma membrane, vacuole	14.72	19.91
CDY46972	Canola	plasma membrane, vacuole	14.62	19.77
CDY38013	Canola	golgi, plasma membrane	10.28	19.68
CDY69826	Canola	cytosol, plastid, vacuole	7.42	19.61
CDY12264	Canola	plasma membrane	14.41	19.26
CDY22585	Canola	plasma membrane	14.72	19.17
CDY07230	Canola	plasma membrane	14.41	19.15
CDX90043	Canola	golgi, plasma membrane	11.55	18.76
CDY38014	Canola	plasma membrane	13.03	17.45
CDY65711	Canola	plasma membrane	13.45	17.16
CDX71600	Canola	plasma membrane	13.45	17.14
CDY68445	Canola	plastid	9.0	16.1
CDY38012	Canola	plasma membrane	3.81	11.88

Protein Annotations

KEGG:00480+1.11.1.-	Gene3D:1.10.238.10	MapMan:10.1.1	Gene3D:2.40.30.10	GO:A0A078F5G7	UniProt:A0A078F5G7
EnsemblPlants:CDY08347	ProteinID:CDY08347	ProteinID:CDY08347.1	ncoils:Coil	InterPro:Cyt_b245_heavy_chain	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6
GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0050664	GO:GO:0055114	GO:GO:0098869	EnsemblPlantsGene:GSBRNA2T00000056001	InterPro:IPR002048	InterPro:IPR017927
InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030	PFAM:PF08414	PRINTS:PR00466
ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF66	InterPro:Riboflavin_synthase-like_b-brl
SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix	UniParc:UPI0004EE6117	SEG:seg

Description

BnaC09g12490DBnaC09g12490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F5G7]

Coordinates

chrLK031985:+:459831..466158

Molecular Weight (calculated)

107943.0 Da

IEP (calculated)

9.460

GRAVY (calculated)

-0.274

Length

944 amino acids

Sequence
(BLAST)

001: MRPFSKNDRR RWSFDSVSAG KLAVGSASTS PGTECSNGGY GEEFVEVTID LQDDDTIVLR SVEPATAINI DISDETAGGG MMTPVSIPRS PTMKRTSSNR
101: LRQFSQELKA EAVAKAKQLS HELKRFSWSR SVSGTLTSAN QNDGGGGIVN SALEARALRK QRAQLDRTRS SAQRALRGLR FISNKNKNVE GWNDVQTNFE
201: KLAKNGYIYR SDFAQCIGMK DSKEFALELY DALSRRRRLK GEKISHDELY EYWLQINDDS FDSRLQIFFD IVDKNEDGRI TEEEVKEIIM LSASANKLSR
301: LKEQAEEYAA LIMEELDPER LGYIELWQLE TLLLQKDTYL NYSQALSYTS QALSQNLQGL RKNSRIHRMS SDFVYFMQEN WKRIWVLSLW IMIMIGLFLW
401: KFFQYKQKDA FHVMGYCLLT AKGAAETLKF NMALILFPVC RNTITWLRST RLSYFIPFDD NINFHKTIAG AIVVAVILHV GDHIACDFPR IVRATEYDYN
501: RYLFHYFQHK QPTYFDLVKG PEGITGILMI ILMAISFTLA TRWFRRNLVK LPKPFDRLTG FNAFWYSHHL FIIVYVLLVL HGIFLYFAKP WYVHTTWMYL
601: AVPVLLYGGE RTLRYFRSGS YSVRLLKVAI YPGNVLTLQM SKPSQFRYKS GQYMFVQCPA VSPFEWHPFS ITSAPGDDYL SIHIRQLGDW TQELKRVFSE
701: VCEPPVAGKS GLLRADETTK KSLPKLLIDG PYGAPAQDYR KYDVLLLVGL GIGATPFISI LKDLLNNILK MEEQADSISD FSRSSENSTG SNSGNNANTP
801: RGKKILKTTN AYFYWVTREQ GSFDWFKGVM NEVAELDQRG VIEMHNYLTS VYEEGDARSA LITMVQALNH AKNGVDIVSG TSVRTHFARP NWKKVLSKLS
901: SKHCNAKIGV FYCGVPVLGK ELSKLCNTFN QKGSTKFEFH KEHF

Best Arabidopsis Sequence Match ( AT1G64060.1 )
(BLAST)

001: MKPFSKNDRR RWSFDSVSAG KTAVGSASTS PGTEYSINGD QEFVEVTIDL QDDDTIVLRS VEPATAINVI GDISDDNTGI MTPVSISRSP TMKRTSSNRF
101: RQFSQELKAE AVAKAKQLSQ ELKRFSWSRS FSGNLTTTST AANQSGGAGG GLVNSALEAR ALRKQRAQLD RTRSSAQRAL RGLRFISNKQ KNVDGWNDVQ
201: SNFEKFEKNG YIYRSDFAQC IGMKDSKEFA LELFDALSRR RRLKVEKINH DELYEYWSQI NDESFDSRLQ IFFDIVDKNE DGRITEEEVK EIIMLSASAN
301: KLSRLKEQAE EYAALIMEEL DPERLGYIEL WQLETLLLQK DTYLNYSQAL SYTSQALSQN LQGLRGKSRI HRMSSDFVYI MQENWKRIWV LSLWIMIMIG
401: LFLWKFFQYK QKDAFHVMGY CLLTAKGAAE TLKFNMALIL FPVCRNTITW LRSTRLSYFV PFDDNINFHK TIAGAIVVAV ILHIGDHLAC DFPRIVRATE
501: YDYNRYLFHY FQTKQPTYFD LVKGPEGITG ILMVILMIIS FTLATRWFRR NLVKLPKPFD RLTGFNAFWY SHHLFVIVYI LLILHGIFLY FAKPWYVRTT
601: WMYLAVPVLL YGGERTLRYF RSGSYSVRLL KVAIYPGNVL TLQMSKPTQF RYKSGQYMFV QCPAVSPFEW HPFSITSAPE DDYISIHIRQ LGDWTQELKR
701: VFSEVCEPPV GGKSGLLRAD ETTKKSLPKL LIDGPYGAPA QDYRKYDVLL LVGLGIGATP FISILKDLLN NIVKMEEHAD SISDFSRSSE YSTGSNGDTP
801: RRKRILKTTN AYFYWVTREQ GSFDWFKGVM NEVAELDQRG VIEMHNYLTS VYEEGDARSA LITMVQALNH AKNGVDIVSG TRVRTHFARP NWKKVLTKLS
901: SKHCNARIGV FYCGVPVLGK ELSKLCNTFN QKGSTKFEFH KEHF

Arabidopsis Description

RBOHFRespiratory burst oxidase homolog protein F [Source:UniProtKB/Swiss-Prot;Acc:O48538]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.