CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25278	Canola	cytosol, peroxisome, plasma membrane	93.77	95.18
Bra033151.1-P	Field mustard	cytosol	74.66	95.03
AT4G11230.1	Thale cress	cytosol	77.93	78.43
CDY08347	Canola	mitochondrion	56.07	56.25
CDY22644	Canola	plasma membrane	34.11	56.08
CDY65632	Canola	nucleus, peroxisome	8.34	54.86
CDY38202	Canola	mitochondrion	53.96	54.19
CDY06348	Canola	cytosol	42.13	48.9
CDX92671	Canola	cytosol	38.65	48.41
CDY35764	Canola	cytosol, nucleus, plasma membrane	45.83	48.28
CDX86335	Canola	cytosol, nucleus, plasma membrane	46.78	48.05
CDX85316	Canola	cytosol, nucleus, plasma membrane	46.78	48.05
CDY45918	Canola	cytosol, nucleus, plasma membrane, plastid	46.57	47.88
CDX86059	Canola	peroxisome, plasma membrane, plastid	19.32	46.8
CDY32647	Canola	cytosol, peroxisome, plasma membrane	44.88	46.7
CDY38845	Canola	cytosol, peroxisome, plasma membrane	44.88	46.7
CDX81049	Canola	cytosol	41.71	46.09
CDY11053	Canola	cytosol, nucleus, plasma membrane	40.02	45.5
CDY26109	Canola	mitochondrion	28.3	45.42
CDX70035	Canola	cytosol	42.45	45.37
CDY08237	Canola	cytosol, peroxisome, plasma membrane	25.45	45.3
CDY21676	Canola	cytosol, peroxisome, plasma membrane, plastid	44.67	45.29
CDX98976	Canola	cytosol	42.77	44.6
CDX81920	Canola	cytosol, nucleus, plasma membrane, plastid	43.93	44.54
CDX78290	Canola	cytosol	40.02	44.38
CDX81047	Canola	cytosol	39.92	44.37
CDX92674	Canola	mitochondrion	16.05	43.68
CDY11054	Canola	cytosol, nucleus, plasma membrane	36.75	42.65
CDY41031	Canola	cytosol, peroxisome, plasma membrane	45.72	42.58
CDX92675	Canola	cytosol	17.32	42.49
CDY09233	Canola	cytosol	39.18	41.97
CDY26689	Canola	cytosol, peroxisome, plasma membrane	44.35	41.3
CDX99140	Canola	cytosol, peroxisome, plasma membrane	32.42	36.37
CDY34341	Canola	nucleus	8.24	30.12
CDY70539	Canola	nucleus	9.08	28.1
CDX86058	Canola	cytosol	10.14	27.75
CDY22645	Canola	cytosol	5.91	24.78
CDY38013	Canola	golgi, plasma membrane	10.03	19.27
CDY22585	Canola	plasma membrane	14.68	19.17
CDY12264	Canola	plasma membrane	14.15	18.98
CDX68510	Canola	extracellular, mitochondrion, plasma membrane, plastid	2.53	18.9
CDY07230	Canola	plasma membrane	13.94	18.59
CDY69826	Canola	cytosol, plastid, vacuole	6.97	18.49
CDX90043	Canola	golgi, plasma membrane	11.3	18.42
CDX88061	Canola	plasma membrane	12.67	18.13
CDY44266	Canola	plasma membrane, vacuole	13.31	18.05
CDY46972	Canola	plasma membrane, vacuole	12.99	17.62
CDY38014	Canola	plasma membrane	12.78	17.16
CDY65711	Canola	plasma membrane	12.78	16.35
CDX71600	Canola	plasma membrane	12.78	16.33
CDY68445	Canola	plastid	7.39	13.26
CDY38012	Canola	plasma membrane	4.12	12.87

Protein Annotations

KEGG:00480+1.11.1.-	Gene3D:1.10.238.10	MapMan:10.1.1	Gene3D:2.40.30.10	GO:A0A078J8U3	UniProt:A0A078J8U3
EnsemblPlants:CDY63433	ProteinID:CDY63433	ProteinID:CDY63433.1	InterPro:Cyt_b245_heavy_chain	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom
InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6	GO:GO:0003674	GO:GO:0003824
GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0050664	GO:GO:0055114
GO:GO:0098869	EnsemblPlantsGene:GSBRNA2T00039289001	InterPro:IPR002048	InterPro:IPR017927	InterPro:NADPH_Ox	PFAM:PF01794
PFAM:PF08022	PFAM:PF08030	PFAM:PF08414	PRINTS:PR00466	PFscan:PS50222	PFscan:PS51384
PANTHER:PTHR11972	PANTHER:PTHR11972:SF66	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380
TMHMM:TMhelix	UniParc:UPI0004EE69E9	SEG:seg	:	:	:

Description

BnaCnng42100DBnaCnng42100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J8U3]

Coordinates

chrLK034299:-:7655..12905

Molecular Weight (calculated)

107510.0 Da

IEP (calculated)

8.177

GRAVY (calculated)

-0.124

Length

947 amino acids

Sequence
(BLAST)

001: MSMSFSHDDR WGSDLASAGE FTQSFPSLGA TYSPSCGEEL LEVTIEFPSG VLVNIDSVST TDPEITSCSA SGSGSSERQV VANAKQFSRD LKRKLQGISQ
101: RDGGGYSCRS APEPVVPHGS ETPDPLMLCR SVTKRLNRNG SCTQRAIHGL RFISSKENEI AAWSEVRDKF ANLSKDGYLC RSDFARCIGM ENENSKEFAE
201: ELFDALCRRR SIMVDKITLQ ELYEFWYQIA DESFDSRLQI FFNMVNKNGD GRITENEVKE LNVILFHVSL LTNASLENII ILSASANNLS RLRERAEEYA
301: ALIMEELSPD GLPSQYIELK DLEMLLLHKD TPQSYSQPFS QTSRALSQNL KDMRWGISRS LLYSFQDNLK RIWVLTLWLM IMVVLFMWKC VQYKRKDAFH
401: VMGYCLVVAK GAAETLKFNM ALILLPVCRI TITYLRSTAL SHSMPFDDSL NFHKTISIAI IIGMLIHACS HLACDFPRII TATDVDYKRY LVHYFGVTRP
501: TYFDLVKGPV GITGFIMVIF MLIAYTLASR RLRRNLTKLP KPFDKLTGFN AFWYSHHLLL AVYVLLIIHG VSLFLEQTWY HQTIWMYLAC PVLLYGGERM
601: LRFFRSRLYR VETCKVVIYP GNVIVLHMSK PTSFEYKSGQ YIFVQCPAVS KFEWHPFSIT SSPGDDYLSI HIRQLGDWTE GIKKAFSVIC QAPDAGKSGL
701: LRADGPNKTS LPELLIDGPY GSPAQDHWKY DVLLLVGLGI GATPFISILR DLLNKIIQQH EQAEGPSGSC SNSNVSSDQS FSCLNSEPGN RISTNRTGML
801: NTKNAYFYWV TREQGSFDWF RQIMSEIADS DIKGVIEMHN YLTSMYDVGD ARTTLLTMIQ TLHHAKNGVD MFSGTKAIIF IDYFFVRTHF GRPKWKKVLS
901: KISTKHKNAR IGVFYCGGPS LGKELSTLCH EFNQTGRSRF EFHKEQF

Best Arabidopsis Sequence Match ( AT4G11230.1 )
(BLAST)

001: MSMSFSGGTH NDRWGSDLAS AGEFTQSFPS LPATYSPSPS SSSSSGEELL EVTIEFPSGV IINIDSVTGT GTDISGTDLE ITSCSDSGSG SRSLSLGWSA
101: SSERLTAGTN SKQQIQKISR RGYGYSSRSA PEPVVPHRGE ITDSVNLPRA LSQRPTRPNR DGSGTERAIH GLKFISSKEN GIVDWNDVQN NFAHLSKDGY
201: LFKSDFAHCI GLENENSKEF ADELFDALCR RRRIMVDKIN LQELYEFWYQ ITDESFDSRL QIFFNMVKNG DGRITENEVK EIIILSASAN NLSRLRERAE
301: EYAALIMEEL APDGLYSQYI ELKDLEILLL EKDISHSYSL PFSQTSRALS QNLKDRRWRM SRNLLYSLQD NWKRIWVLTL WFVIMAWLFM WKCYQYKHKD
401: AFHVMGYCLV MAKGAAETLK FNMALILLPV CRNTITYLRS TALSHSVPFD DCINFHKTIS VAIISAMLLH ATSHLACDFP RILASTDTDY KRYLVKYFGV
501: TRPTYFGLVN TPVGITGIIM VAFMLIAFTL ASRRCRRNLT KLPKPFDKLT GYNAFWYSHH LLLTVYVLLV IHGVSLYLEH KWYRKTVWMY LAVPVLLYVG
601: ERIFRFFRSR LYTVEICKVV IYPGNVVVLR MSKPTSFDYK SGQYVFVQCP SVSKFEWHPF SITSSPGDDY LSIHIRQRGD WTEGIKKAFS VVCHAPEAGK
701: SGLLRADVPN QRSFPELLID GPYGAPAQDH WKYDVVLLVG LGIGATPFVS ILRDLLNNII KQQEQAECIS GSCSNSNISS DHSFSCLNSE AASRIPQTQR
801: KTLNTKNAYF YWVTREQGSF DWFKEIMNEI ADSDRKGVIE MHNYLTSVYE EGDTRSNLLT MIQTLNHAKN GVDIFSGTKV RTHFGRPKWK KVLSKISTKH
901: RNARIGVFYC GVPSLGKELS TLCHEFNQTG ITRFDFHKEQ F

Arabidopsis Description

RBOHIProbable respiratory burst oxidase homolog protein I [Source:UniProtKB/Swiss-Prot;Acc:Q9SUT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.