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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plasma membrane, plastid, extracellular

Predictor Summary:
  • plastid 3
  • plasma membrane 2
  • extracellular 2
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular, mitochondrion, plasma membrane, plastid
Any Predictor:extracellular, mitochondrion, plasma membrane, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:plasma membrane
Predotar:mitochondrion
PProwler:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU2Hr1G094150.3 Barley golgi, plasma membrane 32.28 14.7
CDX88061 Canola plasma membrane 63.78 12.24
GSMUA_Achr8P12260_001 Banana peroxisome 44.88 11.4
CDY44266 Canola plasma membrane, vacuole 62.2 11.32
CDY46972 Canola plasma membrane, vacuole 62.2 11.32
Os04t0578600-01 Rice golgi, mitochondrion, vacuole 38.58 10.91
CDY38013 Canola golgi, plasma membrane 40.16 10.34
CDX90043 Canola golgi, plasma membrane 43.31 9.47
PGSC0003DMT400026254 Potato plasma membrane 50.39 9.08
KRH35246 Soybean plasma membrane 47.24 8.55
PGSC0003DMT400024558 Potato plasma membrane, vacuole 47.24 8.49
GSMUA_Achr8P12250_001 Banana plasma membrane 46.46 8.33
CDY07230 Canola plasma membrane 41.73 7.46
CDY38014 Canola plasma membrane 40.16 7.23
CDX92674 Canola mitochondrion 18.9 6.9
CDY12264 Canola plasma membrane 37.8 6.8
TraesCS2B01G414300.1 Wheat plasma membrane 37.8 6.64
TraesCS2D01G393700.1 Wheat plasma membrane 37.01 6.51
CDY22585 Canola plasma membrane 37.01 6.48
TraesCS2A01G396000.1 Wheat plasma membrane 38.58 6.31
GSMUA_Achr8P12270_001 Banana plasma membrane 43.31 6.04
CDY65711 Canola plasma membrane 33.07 5.68
CDX71600 Canola plasma membrane 33.07 5.67
VIT_16s0050g00990.t01 Wine grape plastid 48.03 5.18
CDY22644 Canola plasma membrane 18.11 3.99
CDX92671 Canola cytosol 22.05 3.7
CDY11053 Canola cytosol, nucleus, plasma membrane 22.83 3.48
CDX86059 Canola peroxisome, plasma membrane, plastid 10.24 3.32
CDY11054 Canola cytosol, nucleus, plasma membrane 20.47 3.19
CDX81047 Canola cytosol 20.47 3.05
CDX81049 Canola cytosol 20.47 3.03
CDY08347 Canola mitochondrion 22.05 2.97
CDX70035 Canola cytosol 20.47 2.93
CDX85316 Canola cytosol, nucleus, plasma membrane 21.26 2.93
CDX86335 Canola cytosol, nucleus, plasma membrane 21.26 2.93
CDY35764 Canola cytosol, nucleus, plasma membrane 20.47 2.89
CDX98976 Canola cytosol 20.47 2.86
CDY38202 Canola mitochondrion 21.26 2.86
CDY32647 Canola cytosol, peroxisome, plasma membrane 20.47 2.86
CDY38845 Canola cytosol, peroxisome, plasma membrane 20.47 2.86
CDY45918 Canola cytosol, nucleus, plasma membrane, plastid 20.47 2.82
CDX78290 Canola cytosol 18.9 2.81
CDY69826 Canola cytosol, plastid, vacuole 7.87 2.8
CDY25278 Canola cytosol, peroxisome, plasma membrane 18.9 2.57
CDX81920 Canola cytosol, nucleus, plasma membrane, plastid 18.9 2.57
CDY63433 Canola cytosol 18.9 2.53
CDY21676 Canola cytosol, peroxisome, plasma membrane, plastid 18.11 2.46
CDX99140 Canola cytosol, peroxisome, plasma membrane 15.75 2.37
CDY06348 Canola cytosol 14.96 2.33
CDY68445 Canola plastid 9.45 2.27
CDY09233 Canola cytosol 15.75 2.26
CDY41031 Canola cytosol, peroxisome, plasma membrane 18.11 2.26
CDY26689 Canola cytosol, peroxisome, plasma membrane 18.11 2.26
CDY26109 Canola mitochondrion 10.24 2.2
CDY08237 Canola cytosol, peroxisome, plasma membrane 8.66 2.07
GSMUA_Achr8P12300_001 Banana extracellular, peroxisome, plastid 3.15 1.75
CDX86058 Canola cytosol 3.15 1.16
CDY70539 Canola nucleus 2.36 0.98
CDY38012 Canola plasma membrane 1.57 0.66
CDY34341 Canola nucleus 0.79 0.39
CDX92675 Canola cytosol 0.79 0.26
CDY65632 Canola nucleus, peroxisome 0.0 0.0
CDY22645 Canola cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:CDX68510EnsemblPlantsGene:GSBRNA2T00126040001GO:A0A078BUS1PANTHER:PTHR11972PANTHER:PTHR11972:SF62ProteinID:CDX68510
ProteinID:CDX68510.1TMHMM:TMhelixUniParc:UPI0004EE467FMapMan:35.1::
Description
BnaC01g25880D
Coordinates
chrLK031788:-:3068669..3074134
Molecular Weight (calculated)
14993.7 Da
IEP (calculated)
9.992
GRAVY (calculated)
0.283
Length
127 amino acids
Sequence
(BLAST)
001: MFIGIAIWVT STPYFRRKKF EIFLYTHQCY GLYIIFYVFH VGDSWLCMIL PNIVLFFIDR YLRFPLLLQH PQSTKPSMLL NARLLPSDNI ELTFSKVRTS
101: LQPNKYTICT CSKPFKTPAA FLLNNLK
Best Arabidopsis Sequence Match ( AT5G23980.1 )
(BLAST)
001: MGNMRSLVKT LMVVLFLGWI LVWIMISTNL FKSKWTPKLS KYLNTTYFGP QGTNLVLLTV PMMFIAVLSC VYLHIQKKPT QPQREWKLKR IMGRVIMVMN
101: PLGIVTATEL TFSLLFVALL AWSLYNYLYL SYHVHLHNDD NAKIWQAKFR AFGLRIGYVG NICWAFLFFP VTRASTILPL VGLTSESSIK YHIWLGHVSN
201: FCFLVHTVVF LIYWAMINKL METFAWNPTY VPNLAGTIAM VIGIAMWVTS LPSFRRKKFE IFFYTHHLYG LYIVFYVIHV GDSWFCMILP NIFLFFIDRY
301: LRFLQSTKRS RLVSARILPS DNLELTFSKT PGLHYTPTSI LFLHVPSISK IQWHPFTITS SSNLEKDTLS VVIRRQGSWT QKLYTHLSSS IDSLEVSTEG
401: PYGPNSFDVS RHNSLILVSG GSGITPFISV IRELISQSQN KSTKLPDVLL VCSFKHYHDL AFLDLIFPLD MSASDISRLN LRIEAYITRE DKKPETTDDH
501: RLLQTKWFKP QPLDSPISPV LGPNNFLWLG VVILSSFVMF LLLIGIVTRY YIYPVDHNTG SIYNFSYRGL WDMFLGSACI FISSSVVFLW RKKQNKEGDK
601: EFKNQVQSVE FQTPTSSPGS WFHGHERELE SVPYQSIVQA TSVHFGSKPN LKKILLEAEG SEDVGVMVCG PRKMRHEVAK ICSSGLAKNL HFEAISFNW
Arabidopsis Description
FRO4Ferric reduction oxidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W110]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.