CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45918	Canola	cytosol, nucleus, plasma membrane, plastid	95.55	93.27
Bra020724.1-P	Field mustard	cytosol, nucleus, plasma membrane, plastid	95.44	93.16
CDX86335	Canola	cytosol, nucleus, plasma membrane	87.88	85.68
CDX85316	Canola	cytosol, nucleus, plasma membrane	87.76	85.57
AT5G47910.1	Thale cress	cytosol, peroxisome, plasma membrane	86.99	84.91
VIT_01s0150g00440.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	73.08	71.1
VIT_01s0150g00450.t01	Wine grape	cytosol	69.3	67.5
CDY22644	Canola	plasma membrane	42.71	66.67
CDY65632	Canola	nucleus, peroxisome	10.34	64.58
CDY38845	Canola	cytosol, peroxisome, plasma membrane	63.52	62.75
CDY32647	Canola	cytosol, peroxisome, plasma membrane	63.52	62.75
CDX92671	Canola	cytosol	51.5	61.24
CDX70035	Canola	cytosol	59.18	60.05
CDY06348	Canola	cytosol	52.95	58.33
CDX98976	Canola	cytosol	58.73	58.15
CDX81049	Canola	cytosol	55.17	57.88
CDY11053	Canola	cytosol, nucleus, plasma membrane	53.62	57.86
CDX81047	Canola	cytosol	54.73	57.75
CDX92674	Canola	mitochondrion	22.02	56.9
CDX78290	Canola	cytosol	53.73	56.56
CDY11054	Canola	cytosol, nucleus, plasma membrane	49.05	54.04
CDY26109	Canola	mitochondrion	35.04	53.39
CDY08237	Canola	cytosol, peroxisome, plasma membrane	31.37	53.01
CDX86059	Canola	peroxisome, plasma membrane, plastid	22.36	51.41
CDY08347	Canola	mitochondrion	53.95	51.38
CDX92675	Canola	cytosol	22.02	51.3
CDY38202	Canola	mitochondrion	51.39	48.99
CDY63433	Canola	cytosol	48.28	45.83
CDY25278	Canola	cytosol, peroxisome, plasma membrane	47.5	45.77
CDY21676	Canola	cytosol, peroxisome, plasma membrane, plastid	47.16	45.4
CDX81920	Canola	cytosol, nucleus, plasma membrane, plastid	46.83	45.07
CDY09233	Canola	cytosol	42.16	42.87
CDY41031	Canola	cytosol, peroxisome, plasma membrane	47.27	41.79
CDY26689	Canola	cytosol, peroxisome, plasma membrane	45.83	40.51
CDX99140	Canola	cytosol, peroxisome, plasma membrane	36.93	39.34
CDY34341	Canola	nucleus	10.68	37.07
CDY70539	Canola	nucleus	11.57	33.99
CDY22645	Canola	cytosol	8.01	31.86
CDX86058	Canola	cytosol	11.57	30.06
CDX68510	Canola	extracellular, mitochondrion, plasma membrane, plastid	2.89	20.47
CDX88061	Canola	plasma membrane	14.24	19.34
CDY38013	Canola	golgi, plasma membrane	10.23	18.66
CDY69826	Canola	cytosol, plastid, vacuole	7.34	18.49
CDY46972	Canola	plasma membrane, vacuole	14.24	18.34
CDY44266	Canola	plasma membrane, vacuole	14.13	18.19
CDY22585	Canola	plasma membrane	14.35	17.79
CDX90043	Canola	golgi, plasma membrane	11.23	17.38
CDY38014	Canola	plasma membrane	13.57	17.3
CDY12264	Canola	plasma membrane	13.46	17.14
CDY07230	Canola	plasma membrane	13.46	17.04
CDY65711	Canola	plasma membrane	12.68	15.41
CDX71600	Canola	plasma membrane	12.68	15.38
CDY68445	Canola	plastid	8.34	14.2
CDY38012	Canola	plasma membrane	3.56	10.56

Protein Annotations

KEGG:00480+1.11.1.-	Gene3D:1.10.238.10	MapMan:10.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	GO:A0A078HE96
UniProt:A0A078HE96	EnsemblPlants:CDY35764	ProteinID:CDY35764	ProteinID:CDY35764.1	InterPro:Cyt_b245_heavy_chain	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6
GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0050664	GO:GO:0055114	GO:GO:0098869	EnsemblPlantsGene:GSBRNA2T00059213001	InterPro:IPR002048	InterPro:IPR017927
InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030	PFAM:PF08414	PRINTS:PR00466
ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF94	InterPro:Riboflavin_synthase-like_b-brl
SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix	UniParc:UPI0004EE9DBB	SEG:seg

Description

BnaC02g38300DBnaC02g38300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HE96]

Coordinates

chrLK032360:-:31602..39469

Molecular Weight (calculated)

102156.0 Da

IEP (calculated)

8.409

GRAVY (calculated)

-0.225

Length

899 amino acids

Sequence
(BLAST)

001: MGQDYSYSQP SSSDEFDMTY LLEAEAALYA DEGQSSFSVG EPRCRGGRED DEYVEITLDI RDDSVAVHSV QQASPGGPQN LEDPELTLLT KKTLESSLNK
101: SSSLSFFRST SSRIKNASRE LRRVFSRRPS PAVRRFDRTS SAAIHALKGL KFIATKTAAW PAVEERFDKL SLESNGLLLS SKFWECLGMN KESKDFADQL
201: FRALAHRNNI SGDAITKDQL RFFWEQISDE SFDAKLQVFF DMVDKDEDGR VTEEEVAEII SLSASANKLS NIQKQAKEYA ALIMEELDPD NAGYIMIENL
301: EMLLLQAPNQ SVRIGDSRIL SQMLSQKLKP TTESNPLVRW SEKIKYFVID NWQRIWIMML WLAICAGLFT YKFIEYRNNK DAFGVMRYCV CVAKGGAETL
401: KFNMALILLP VCRNTITWLR NKTKLGVVVP FDDNLNFHKV IASGIVVGVL LHVVSHLACD FPRLLAADEE TYEPMIQYFG EQPESYWHFV KEVEGWTGIV
501: MVVLMVIAFT LATPWFRRNK LNLPNFLKKL TGFNAFWYSH HLFIIVYTLL IVHGIKLYLT KSWEKKTTWM YLAVPILLYG SERLIRASRS SIKPVKIVKV
601: AVYPGNVLSL HMTKPQGFKY KSGQYMFVNC RAVSPFEWHP FSITSAPGDD YVSVHIRTLG DWTRKLKTVF SEVCKPPTAG KSGLLRADGG DSIAFPKILI
701: DGPYGAPAQD YKKYDVVLLV GLGIGATPMI SILKDIINNM KSRDRDSDIE NNSSNGNSKG FRTRKAYFYW VTREQGSFEW FKGIMDEVSE LDDEGIIELH
801: NYCTSVYEEG DARVALIAML QSLQHAKNGV DVVSGTRVKS HFAKPNWRQV YKRIAVQHPD KRIGVFYCGA PGLTKDLKNL ALDFSRKTST KFDFHKENF

Best Arabidopsis Sequence Match ( AT5G47910.1 )
(BLAST)

001: MKMRRGNSSN DHELGILRGA NSDTNSDTES IASDRGAFSG PLGRPKRASK KNARFADDLP KRSNSVAGGR GDDDEYVEIT LDIRDDSVAV HSVQQAAGGG
101: GHLEDPELAL LTKKTLESSL NNTTSLSFFR STSSRIKNAS RELRRVFSRR PSPAVRRFDR TSSAAIHALK GLKFIATKTA AWPAVDQRFD KLSADSNGLL
201: LSAKFWECLG MNKESKDFAD QLFRALARRN NVSGDAITKE QLRIFWEQIS DESFDAKLQV FFDMVDKDED GRVTEEEVAE IISLSASANK LSNIQKQAKE
301: YAALIMEELD PDNAGFIMIE NLEMLLLQAP NQSVRMGDSR ILSQMLSQKL RPAKESNPLV RWSEKIKYFI LDNWQRLWIM MLWLGICGGL FTYKFIQYKN
401: KAAYGVMGYC VCVAKGGAET LKFNMALILL PVCRNTITWL RNKTKLGTVV PFDDSLNFHK VIASGIVVGV LLHAGAHLTC DFPRLIAADE DTYEPMEKYF
501: GDQPTSYWWF VKGVEGWTGI VMVVLMAIAF TLATPWFRRN KLNLPNFLKK LTGFNAFWYT HHLFIIVYAL LIVHGIKLYL TKIWYQKTTW MYLAVPILLY
601: ASERLLRAFR SSIKPVKMIK VAVYPGNVLS LHMTKPQGFK YKSGQFMLVN CRAVSPFEWH PFSITSAPGD DYLSVHIRTL GDWTRKLRTV FSEVCKPPTA
701: GKSGLLRADG GDGNLPFPKV LIDGPYGAPA QDYKKYDVVL LVGLGIGATP MISILKDIIN NMKGPDRDSD IENNNSNNNS KGFKTRKAYF YWVTREQGSF
801: EWFKGIMDEI SELDEEGIIE LHNYCTSVYE EGDARVALIA MLQSLQHAKN GVDVVSGTRV KSHFAKPNWR QVYKKIAVQH PGKRIGVFYC GMPGMIKELK
901: NLALDFSRKT TTKFDFHKEN F

Arabidopsis Description

RBOHDRespiratory burst oxidase homolog protein D [Source:UniProtKB/Swiss-Prot;Acc:Q9FIJ0]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.