CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34341	Canola	nucleus	71.24	84.17
Bra013862.1-P	Field mustard	cytosol	70.26	83.01
CDX92675	Canola	cytosol	23.86	18.91
CDY22645	Canola	cytosol	13.4	18.14
CDX86058	Canola	cytosol	17.97	15.9
CDY26109	Canola	mitochondrion	28.76	14.92
CDY32647	Canola	cytosol, peroxisome, plasma membrane	36.93	12.42
CDY38845	Canola	cytosol, peroxisome, plasma membrane	36.6	12.31
CDX81049	Canola	cytosol	33.99	12.14
CDY08237	Canola	cytosol, peroxisome, plasma membrane	20.91	12.03
CDX85316	Canola	cytosol, nucleus, plasma membrane	35.29	11.71
CDX86335	Canola	cytosol, nucleus, plasma membrane	35.29	11.71
CDY45918	Canola	cytosol, nucleus, plasma membrane, plastid	34.97	11.62
CDY35764	Canola	cytosol, nucleus, plasma membrane	33.99	11.57
Solyc06g068680.2.1	Tomato	cytosol	32.35	11.55
CDY11053	Canola	cytosol, nucleus, plasma membrane	30.72	11.28
CDX70035	Canola	cytosol	32.35	11.17
CDX81047	Canola	cytosol	30.07	10.8
CDX98976	Canola	cytosol	32.03	10.79
CDX78290	Canola	cytosol	30.07	10.77
CDY06348	Canola	cytosol	28.43	10.66
CDX92671	Canola	cytosol	25.16	10.19
CDY21676	Canola	cytosol, peroxisome, plasma membrane, plastid	30.39	9.96
CDX81920	Canola	cytosol, nucleus, plasma membrane, plastid	30.39	9.96
VIT_03s0063g00950.t01	Wine grape	extracellular, vacuole	6.86	9.86
CDY08347	Canola	mitochondrion	30.07	9.75
CDY11054	Canola	cytosol, nucleus, plasma membrane	25.49	9.56
CDY41031	Canola	cytosol, peroxisome, plasma membrane	31.7	9.54
CDY26689	Canola	cytosol, peroxisome, plasma membrane	30.72	9.24
CDY63433	Canola	cytosol	28.1	9.08
CDY25278	Canola	cytosol, peroxisome, plasma membrane	25.82	8.47
CDY38202	Canola	mitochondrion	25.49	8.27
CDY09233	Canola	cytosol	23.2	8.03
CDX99140	Canola	cytosol, peroxisome, plasma membrane	21.9	7.94
CDY38012	Canola	plasma membrane	4.58	4.62
CDY65632	Canola	nucleus, peroxisome	1.96	4.17
CDY65711	Canola	plasma membrane	7.52	3.11
CDX71600	Canola	plasma membrane	7.52	3.1
CDY22585	Canola	plasma membrane	6.86	2.9
CDY12264	Canola	plasma membrane	6.54	2.83
CDY38014	Canola	plasma membrane	6.21	2.7
CDX90043	Canola	golgi, plasma membrane	4.9	2.58
CDY44266	Canola	plasma membrane, vacuole	5.88	2.58
CDY46972	Canola	plasma membrane, vacuole	5.88	2.58
CDX68510	Canola	extracellular, mitochondrion, plasma membrane, plastid	0.98	2.36
CDY07230	Canola	plasma membrane	4.9	2.11
CDY22644	Canola	plasma membrane	3.92	2.08
CDX86059	Canola	peroxisome, plasma membrane, plastid	2.61	2.05
CDX88061	Canola	plasma membrane	3.92	1.81
CDX92674	Canola	mitochondrion	1.96	1.72
CDY69826	Canola	cytosol, plastid, vacuole	1.31	1.12
CDY38013	Canola	golgi, plasma membrane	1.63	1.01
CDY68445	Canola	plastid	1.63	0.95

Protein Annotations

KEGG:00480+1.11.1.-	Gene3D:1.10.238.10	MapMan:35.1	GO:A0A078JUP4	UniProt:A0A078JUP4	EnsemblPlants:CDY70539
ProteinID:CDY70539	ProteinID:CDY70539.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0050664	GO:GO:0055114	GO:GO:0098869	EnsemblPlantsGene:GSBRNA2T00004171001	InterPro:IPR002048
InterPro:NADPH_Ox	PFAM:PF08414	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR11972	PANTHER:PTHR11972:SF64
SUPFAM:SSF47473	UniParc:UPI0004EE2205	:	:	:	:

Description

BnaC01g41590DBnaC01g41590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JUP4]

Coordinates

chrLK042435:+:784..2149

Molecular Weight (calculated)

34666.0 Da

IEP (calculated)

5.180

GRAVY (calculated)

-0.667

Length

306 amino acids

Sequence
(BLAST)

001: MERPVSFDVT DYNPEGDDWS NDLIPHRDSM SGSSSPPIHQ NPEIKSPEDA TEYVTITLDI QGDNVVVEEN TEPMVRRRQG SRKKSVVNRR TLDEPSRSKF
101: DSSEALKGLK MFISMTDAGW IAVERRFDKM TAKTGGLLDP LNFGECLGIN SKEFALGLFY TLARQRDISC EGIYGTDQRL SYKVESIEFV KCRADKDGDG
201: RLSEEELKQF IRLTASANNQ STTQNMVDKY AAMIMKELDP NNFGYIMMES LEVLLLDVET HSENKITSTD QETKKPATKR WYKVIRDIPS SSLIPCLKKT
301: SSTKKT

Best Arabidopsis Sequence Match ( AT5G51060.1 )
(BLAST)

001: MSRVSFEVSG GYHSDAEAGN SGPMSGGQLP PIYKKPGNSR FTAENSQRTR TAPYVDLTVD VQDDTVSVHS LKMEGGSSVE ESPELTLLKR NRLEKKTTVV
101: KRLASVSHEL KRLTSVSGGI GGRKPPRPAK LDRTKSAASQ ALKGLKFISK TDGGAGWSAV EKRFNQITAT TGGLLLRTKF GECIGMTSKD FALELFDALA
201: RRRNITGEVI DGDQLKEFWE QINDQSFDSR LKTFFDMVDK DADGRLTEDE VREIISLSAS ANNLSTIQKR ADEYAALIME ELDPDNIGYI MLESLETLLL
301: QAATQSVITS TGERKNLSHM MSQRLKPTFN RNPLKRWYRG LRFFLLDNWQ RCWVIVLWFI VMAILFTYKY IQYRRSPVYP VMGDCVCMAK GAAETVKLNM
401: ALILLPVCRN TITWLRNKTR LGRVVPFDDN LNFHKVIAVG IIVGVTMHAG AHLACDFPRL LHATPEAYRP LRQFFGDEQP KSYWHFVNSV EGITGLVMVL
501: LMAIAFTLAT PWFRRGKLNY LPGPLKKLAS FNAFWYTHHL FVIVYILLVA HGYYLYLTRD WHNKTTWMYL VVPVVLYACE RLIRAFRSSI KAVTIRKVAV
601: YPGNVLAIHL SRPQNFKYKS GQYMFVNCAA VSPFEWHPFS ITSAPQDDYL SVHIRVLGDW TRALKGVFSE VCKPPPAGVS GLLRADMLHG ANNPDFPKVL
701: IDGPYGAPAQ DYKKYEVVLL VGLGIGATPM ISIVKDIVNN IKAKEQAQLN RMENGTSEPQ RSKKESFRTR RAYFYWVTRE QGSFDWFKNI MNEVAERDAN
801: RVIEMHNYCT SVYEEGDARS ALIHMLQSLN HAKNGVDIVS GTRVMSHFAK PNWRNVYKRI AMDHPNTKVG VFYCGAPALT KELRHLALDF THKTSTRFSF
901: HKENF

Arabidopsis Description

RBOHCRHD2 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.