CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38845	Canola	cytosol, peroxisome, plasma membrane	99.67	99.67
Bra029194.1-P	Field mustard	cytosol	99.56	99.56
AT5G51060.1	Thale cress	cytosol	91.98	92.49
CDX92671	Canola	cytosol	58.79	70.77
CDY11053	Canola	cytosol, nucleus, plasma membrane	63.85	69.75
CDX92674	Canola	mitochondrion	25.71	67.24
CDY65632	Canola	nucleus, peroxisome	10.44	65.97
CDY11054	Canola	cytosol, nucleus, plasma membrane	58.02	64.71
CDY26109	Canola	mitochondrion	41.65	64.24
CDX92675	Canola	cytosol	27.03	63.73
CDY35764	Canola	cytosol, nucleus, plasma membrane	62.75	63.52
CDY22644	Canola	plasma membrane	39.89	63.02
CDY45918	Canola	cytosol, nucleus, plasma membrane, plastid	63.63	62.87
CDX70035	Canola	cytosol	60.99	62.64
CDY08237	Canola	cytosol, peroxisome, plasma membrane	36.48	62.41
CDX86335	Canola	cytosol, nucleus, plasma membrane	63.19	62.36
KRH41026	Soybean	mitochondrion	60.55	62.05
CDX85316	Canola	cytosol, nucleus, plasma membrane	62.86	62.04
KRH59706	Soybean	cytosol	60.55	61.36
KRH63901	Soybean	cytosol, nucleus, plasma membrane	62.31	61.1
VIT_19s0014g02830.t01	Wine grape	cytosol	56.37	61.07
CDX98976	Canola	cytosol	60.77	60.9
KRH54051	Soybean	cytosol, nucleus, plasma membrane	62.42	60.36
CDX81049	Canola	cytosol	56.15	59.63
CDX81047	Canola	cytosol	54.73	58.45
CDY06348	Canola	cytosol	51.21	57.11
CDX78290	Canola	cytosol	53.52	57.03
CDY08347	Canola	mitochondrion	52.09	50.21
CDX86059	Canola	peroxisome, plasma membrane, plastid	20.77	48.34
CDY38202	Canola	mitochondrion	49.89	48.14
CDY21676	Canola	cytosol, peroxisome, plasma membrane, plastid	46.26	45.07
CDY63433	Canola	cytosol	46.7	44.88
CDY25278	Canola	cytosol, peroxisome, plasma membrane	45.82	44.69
CDX81920	Canola	cytosol, nucleus, plasma membrane, plastid	45.71	44.54
CDY09233	Canola	cytosol	42.2	43.44
CDY41031	Canola	cytosol, peroxisome, plasma membrane	46.59	41.69
CDY34341	Canola	nucleus	11.65	40.93
CDY26689	Canola	cytosol, peroxisome, plasma membrane	45.16	40.41
CDX99140	Canola	cytosol, peroxisome, plasma membrane	36.15	38.98
CDY70539	Canola	nucleus	12.42	36.93
CDY22645	Canola	cytosol	8.35	33.63
CDX86058	Canola	cytosol	12.2	32.08
CDX68510	Canola	extracellular, mitochondrion, plasma membrane, plastid	2.86	20.47
CDY69826	Canola	cytosol, plastid, vacuole	7.25	18.49
CDX88061	Canola	plasma membrane	13.3	18.28
CDY44266	Canola	plasma membrane, vacuole	13.74	17.91
CDY38013	Canola	golgi, plasma membrane	9.56	17.65
CDY46972	Canola	plasma membrane, vacuole	13.41	17.48
CDX90043	Canola	golgi, plasma membrane	11.1	17.38
CDY22585	Canola	plasma membrane	13.41	16.83
CDY38014	Canola	plasma membrane	12.86	16.6
CDY12264	Canola	plasma membrane	12.75	16.43
CDY07230	Canola	plasma membrane	12.75	16.34
CDY65711	Canola	plasma membrane	12.42	15.27
CDX71600	Canola	plasma membrane	12.42	15.25
CDY68445	Canola	plastid	8.02	13.83
CDY38012	Canola	plasma membrane	3.96	11.88

Protein Annotations

KEGG:00480+1.11.1.-	Gene3D:1.10.238.10	MapMan:10.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	GO:A0A078H5B7
UniProt:A0A078H5B7	EnsemblPlants:CDY32647	ProteinID:CDY32647	ProteinID:CDY32647.1	InterPro:Cyt_b245_heavy_chain	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6
GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0050664	GO:GO:0055114	GO:GO:0098869	EnsemblPlantsGene:GSBRNA2T00052685001	InterPro:IPR002048	InterPro:IPR017927
InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030	PFAM:PF08414	PRINTS:PR00466
ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF64	InterPro:Riboflavin_synthase-like_b-brl
SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix	UniParc:UPI0004EE5BC4	SEG:seg

Description

BnaC03g16150DBnaC03g16150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5B7]

Coordinates

chrLK032297:+:427765..432856

Molecular Weight (calculated)

103042.0 Da

IEP (calculated)

9.849

GRAVY (calculated)

-0.240

Length

910 amino acids

Sequence
(BLAST)

001: MQRVSFEVSG SGYNSDAESS GYMSGPMSGQ LPPVYKKPAI KNSGFSGEHR RPQAPYVDIT VDVHDDRVSV NSLKSPGSEG GSSVEESPEL TLLKRNRLEK
101: KTSVVKRLAS VSHELKRITS VSSSSTRKAG RGAAKLDRTK SAAAQALKGL KFISKNDGGA GWSAVEKRFN QITATTGGLL IRTKFGECIG MNSKEFALEL
201: FDALARRRNI TGEVIDGDQL KEFWEQINDQ SFDSRLKTFF DMVDKDADGR LTEDEVREII GLSASANNLN TIQKRADEYA ALIMEELDPD NIGYIMLESL
301: ETLLLQAASQ SVITSTGERK NLSQMMSQRL KPTFNRNPLK RWYRGLRFFV LDNWQRCWVI VLWLIAMAIL FVYKYIQYRR SPVYPVMGDC VCMAKGAAET
401: VKLNMALILL PVCRNTITWL RNKTRLGRVV PFDDNLNFHK VIAVGILVGV TIHAGAHLSC DFPRLLDATP EQYRPLRQFF GEEQPQSYWH FVNSVEGITG
501: LVMVLLMAIA FTLATPWFRR GKLNLPGPLK QLASFNAFWY THHLFVIVYV LLVAHGYYLY ITKDWRQKTT WMYLVVPVVL YGCERLIRAF RSSIKAVTIR
601: KVAVYPGNVL AIHLSRPQNF KYKSGQYMFV NCAAVSPFEW HPFSITSAPQ DDYLSVHIRV LGDWTRALKG VFSEVCKPPP AGVSGLLRAD MMHGANNPDF
701: PKVLIDGPYG APAQDYKKYE VVLLVGLGIG ATPMISIVKD IVNNIRAKEQ AELNRMEHGT SEPQQRNKKE SFRTRRAYFY WVTREQGSFD WFKNIMNEVA
801: ERDTNRIIEL HNYCTSVYEE GDARSALIHM LQSLNHAKNG VDIVSGTRVM SHFAKPNWRN VYKRIAMDHP NTKVGVFYCG APALTKELRH LALDFTHKTS
901: TRFSFHKENF

Best Arabidopsis Sequence Match ( AT5G51060.1 )
(BLAST)

001: MSRVSFEVSG GYHSDAEAGN SGPMSGGQLP PIYKKPGNSR FTAENSQRTR TAPYVDLTVD VQDDTVSVHS LKMEGGSSVE ESPELTLLKR NRLEKKTTVV
101: KRLASVSHEL KRLTSVSGGI GGRKPPRPAK LDRTKSAASQ ALKGLKFISK TDGGAGWSAV EKRFNQITAT TGGLLLRTKF GECIGMTSKD FALELFDALA
201: RRRNITGEVI DGDQLKEFWE QINDQSFDSR LKTFFDMVDK DADGRLTEDE VREIISLSAS ANNLSTIQKR ADEYAALIME ELDPDNIGYI MLESLETLLL
301: QAATQSVITS TGERKNLSHM MSQRLKPTFN RNPLKRWYRG LRFFLLDNWQ RCWVIVLWFI VMAILFTYKY IQYRRSPVYP VMGDCVCMAK GAAETVKLNM
401: ALILLPVCRN TITWLRNKTR LGRVVPFDDN LNFHKVIAVG IIVGVTMHAG AHLACDFPRL LHATPEAYRP LRQFFGDEQP KSYWHFVNSV EGITGLVMVL
501: LMAIAFTLAT PWFRRGKLNY LPGPLKKLAS FNAFWYTHHL FVIVYILLVA HGYYLYLTRD WHNKTTWMYL VVPVVLYACE RLIRAFRSSI KAVTIRKVAV
601: YPGNVLAIHL SRPQNFKYKS GQYMFVNCAA VSPFEWHPFS ITSAPQDDYL SVHIRVLGDW TRALKGVFSE VCKPPPAGVS GLLRADMLHG ANNPDFPKVL
701: IDGPYGAPAQ DYKKYEVVLL VGLGIGATPM ISIVKDIVNN IKAKEQAQLN RMENGTSEPQ RSKKESFRTR RAYFYWVTRE QGSFDWFKNI MNEVAERDAN
801: RVIEMHNYCT SVYEEGDARS ALIHMLQSLN HAKNGVDIVS GTRVMSHFAK PNWRNVYKRI AMDHPNTKVG VFYCGAPALT KELRHLALDF THKTSTRFSF
901: HKENF

Arabidopsis Description

RBOHCRHD2 [Source:UniProtKB/TrEMBL;Acc:A0A178UIV0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.