CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59706	Soybean	cytosol	96.51	95.43
KRH63901	Soybean	cytosol, nucleus, plasma membrane	76.35	73.06
GSMUA_Achr6P11760_001	Banana	golgi	33.45	72.79
GSMUA_Achr10P...	Banana	plasma membrane	42.45	72.36
KRH54051	Soybean	cytosol, nucleus, plasma membrane	76.01	71.73
Os11t0537400-01	Rice	plasma membrane	3.15	63.64
GSMUA_Achr6P16270_001	Banana	cytosol	61.49	63.41
KRH33894	Soybean	cytosol	58.56	63.03
VIT_19s0014g02830.t01	Wine grape	cytosol	58.78	62.14
AT5G51060.1	Thale cress	cytosol	62.84	61.66
GSMUA_Achr2P21340_001	Banana	cytosol, peroxisome, plasma membrane	57.32	61.03
CDY32647	Canola	cytosol, peroxisome, plasma membrane	62.05	60.55
KRG96816	Soybean	cytosol	60.47	60.54
Bra029194.1-P	Field mustard	cytosol	61.94	60.44
CDY38845	Canola	cytosol, peroxisome, plasma membrane	61.94	60.44
GSMUA_Achr10P...	Banana	cytosol	62.39	60.28
KRH68525	Soybean	cytosol	59.91	60.11
TraesCS4B01G327800.2	Wheat	cytosol	61.37	59.43
TraesCS4D01G324800.1	Wheat	cytosol	61.37	59.37
TraesCS5A01G499900.1	Wheat	cytosol	61.15	59.09
TraesCS5A01G301700.1	Wheat	cytosol	61.15	59.02
TraesCS5D01G306400.1	Wheat	cytosol	60.92	59.0
KRG92895	Soybean	extracellular, mitochondrion	59.01	58.94
TraesCS5B01G299000.1	Wheat	cytosol	60.92	58.93
CDX70035	Canola	cytosol	58.0	58.13
CDX92671	Canola	cytosol	49.32	57.94
AT4G25090.1	Thale cress	cytosol	55.29	57.83
Bra009266.1-P	Field mustard	cytosol	58.11	57.21
AT5G07390.1	Thale cress	cytosol	57.77	56.87
CDX92674	Canola	mitochondrion	22.18	56.61
CDX98976	Canola	cytosol	57.88	56.61
HORVU1Hr1G091930.1	Barley	peroxisome, plasma membrane	29.28	56.4
TraesCS1B01G295100.1	Wheat	plasma membrane	42.91	55.78
CDY11053	Canola	cytosol, nucleus, plasma membrane	52.25	55.7
Zm00001d052653_P003	Maize	cytosol, plastid	60.81	55.61
Bra019191.1-P	Field mustard	cytosol, nucleus, plasma membrane	52.14	55.58
HORVU4Hr1G081670.1	Barley	cytosol	61.04	55.48
CDX81049	Canola	cytosol	53.49	55.43
GSMUA_Achr6P11770_001	Banana	cytosol	25.0	55.22
Bra019189.1-P	Field mustard	cytosol, nucleus, plasma membrane	50.68	54.02
CDX81047	Canola	cytosol	51.69	53.87
GSMUA_Achr10P...	Banana	nucleus, plastid	16.89	53.76
Zm00001d007421_P004	Maize	cytosol	57.21	53.59
CDY26109	Canola	mitochondrion	35.47	53.39
CDY08237	Canola	cytosol, peroxisome, plasma membrane	31.98	53.38
CDX78290	Canola	cytosol	51.24	53.28
CDY11054	Canola	cytosol, nucleus, plasma membrane	48.2	52.45
KRH27880	Soybean	cytosol	54.5	52.21
KRH77593	Soybean	cytosol	54.28	52.0
HORVU1Hr1G072160.5	Barley	cytosol	54.28	51.55
Zm00001d007430_P002	Maize	cytosol	47.3	51.09
CDX92675	Canola	cytosol	22.18	51.04
KRH41250	Soybean	cytosol	54.05	51.01
TraesCS1A01G285700.1	Wheat	cytosol	53.6	50.96
KRH59983	Soybean	cytosol, nucleus, plasma membrane	53.83	50.8
OQU83587	Sorghum	plastid	61.37	50.51
Bra011911.1-P	Field mustard	cytosol	35.36	48.76
TraesCS1B01G295300.1	Wheat	cytosol	46.62	48.59
Zm00001d007426_P001	Maize	cytosol, plastid	54.05	48.24
HORVU1Hr1G072140.1	Barley	cytosol	49.77	47.58
TraesCS1D01G284800.1	Wheat	plastid	53.38	47.45
TraesCS1A01G357100.1	Wheat	cytosol	34.46	47.0
KRH37549	Soybean	cytosol	48.87	46.77
KRH12608	Soybean	cytosol	48.65	46.15
KRH49079	Soybean	cytosol	43.81	45.29
TraesCS1D01G285000.1	Wheat	cytosol	46.17	45.15
HORVU5Hr1G078630.1	Barley	cytosol	47.52	43.73
KRH03132	Soybean	plastid	37.95	41.05
KRH56816	Soybean	plastid	37.61	40.73
HORVU0Hr1G013380.4	Barley	plastid	35.36	39.95
TraesCS1D01G284900.1	Wheat	cytosol	51.13	39.14
TraesCS1B01G295200.1	Wheat	cytosol	50.68	36.79
KRH48086	Soybean	plasma membrane	14.3	17.69
KRH06603	Soybean	plasma membrane	14.19	17.55
KRH35248	Soybean	plasma membrane	13.96	17.39
KRH35246	Soybean	plasma membrane	13.74	17.38
KRH03224	Soybean	peroxisome	14.08	17.34
KRH36697	Soybean	plasma membrane	14.19	17.17
KRH57132	Soybean	plasma membrane	12.39	16.9
KRH11700	Soybean	plasma membrane	13.63	16.53
KRH00822	Soybean	plasma membrane	13.18	16.32

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	EntrezGene:100814238	Gene3D:2.40.30.10	Gene3D:3.40.50.80	EMBL:ACUP02004747
InterPro:Cyt_b245_heavy_chain	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd
InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6	EnsemblPlantsGene:GLYMA_08G005900	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0050664	GO:GO:0055114	GO:GO:0098869
UniProt:I1KP09	InterPro:IPR002048	InterPro:IPR017927	EnsemblPlants:KRH41026	ProteinID:KRH41026	ProteinID:KRH41026.1
InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030	PFAM:PF08414	PRINTS:PR00466
ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF64	InterPro:Riboflavin_synthase-like_b-brl
SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix	UniParc:UPI000233929C	SEG:seg

Description

hypothetical protein

Coordinates

chr8:+:479419..485100

Molecular Weight (calculated)

100623.0 Da

IEP (calculated)

8.130

GRAVY (calculated)

-0.249

Length

888 amino acids

Sequence
(BLAST)

001: MGGTCADLHH HESDIELTDA ERIGTDVGPD SGTKSQGEEA EGQHYVEVTM DIHRDSVALH SVKTVAADDV DMVEEEEEEG DKLGLMGKKR LEKKTSFGAS
101: VVQSAANRMK QLKRLASFSK PAPKHFERTK SAVGHALTGL KFISKTDGGA GWVEVEKRFH KLTATTDGYL PRALFAQCLG LNKESEAYAE KLFDTLARQR
201: GIQGGSINKI QMKEFWDHIS DQSFDTRLKT FFDMVDKDAD GRITEEEIKE IICLSATANK LSNIQKQAEE YAALIMEELD PDDTGYIMID NLETLLLHGP
301: EETTRGESKY LSQMLSQKLK PTFADSAVMR WCRDAKYFLL DNWQRSWVLA LWIGVMFGLF AYKFVQYRRK AAYEVMGHCV CMAKGAAETL KLNMALILLP
401: VCRNTITWLR NKTKLGVVVP LDDNINFHKV IAVAIAVAVA VHSIYHLTCD FPRLLHASDE KYKLMQPFFG DRPSDYWYFV KSWEGVTGII IVVLMAIAFT
501: LANPRFRRGR AKLPKPFNKF TGFNAFWYSH HLFVIVYALL VVHGIKLYLT KEWYKKTTWM YLAIPITIYA LERLVRAFRS SIKSVKILKV TLYPGNVLSL
601: KMSKPQGFSY KSGQYMFVNC AAVSPFEWHP FSITSAPDDD YLSVHIKILG DWTRSLKAKF TQACQQPLNG QSGLLRAECL KGDNSPSSFP KVLVDGPYGA
701: PAQDYREYEV VLLVGLGIGA TPMISILKDM VNNFKANDEE EGGQERVSDF KTRRAYFYWV TREQGSFDWF KGVMNEVAEE DRRKVIELHS YCTSVYEEGD
801: ARSALIAMLQ SLNHAKNGVD IVSGTRVMSH FAKPNWRSVY KRIALNHPDA RVGVFYCGPS ALTHELRQLA LDFSHNTSTK YDFHKENF

Best Arabidopsis Sequence Match ( AT4G25090.2 )
(BLAST)

001: MQRVSFEVKD TEAEKSSSEI LSGSLPSTYR NPAMENVGNA VDDGSSVKNN PKLDMQKQNG LVKWFKKCLT MVSGESKAPR LDRSKSTAGQ ALKGLKIISK
101: TDGNAAWTVV EKRYLKITAN TDGLLLRSKF GECIGMNSKE FALELFDALA RKSHLKGDVI TETELKKFWE QINDKSFDSR LITFFDLMDK DSDGRLTEDE
201: VREIIKLSSS ANHLSCIQNK ADEYAAMIME ELDPDHMGYI MVNFLDHDIN SEERKELSDM LTESLKPTRD PNHLRRWYCQ LRFFVLDSWQ RVWVIALWLT
301: IMAILFAYKY IQYKNRAVYE VLGPCVCLAK GAAETLKLNM ALILLPVCRN TITWLRNKTR LGVFVPFDDN LNFHKVIAVG IAIGVAIHSV SHLACDFPLL
401: IAATPAEYMP LGKFFGEEQP KRYLHFVKST EGITGLVMVF LMVIAFTLAM PWFRRGKLEK KLPGPLKKLA SFNAFWYTHH LFVIVYILLV LHGYYIYLNK
501: EWYKKTTWMY LAVPVALYAY ERLIRAFRSS IRTVKVLKMA AYPGKVLTLQ MSKPTNFKYM SGQYMFVNCP AVSPFEWHPF SITSTPQDDY LSVHIKALGD
601: WTEAIQGVFS EVSKPPPVGD MLNGANSPRF PKIMIDGPYG APAQDYKKYE VVLLIGLGIG ATPMISIIKD IINNTETKEQ LSQMEKGSPQ EQQGNKETFK
701: TRRAYFYWVT KEQGTFDWFK NIMNEIAERD KSKVIELHNH CTSVYEEGDV RSALIRMLQS LNYAKNGLDI VAGTRVMSHF ARPNWKNVYK QIAMDHPGAN
801: VGVFYCGAPV LTKELRQLAL EFTHKTSTRF SFHKENF

Arabidopsis Description

RBOHGPutative respiratory burst oxidase homolog protein G [Source:UniProtKB/Swiss-Prot;Acc:Q9SW17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.