CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89230
KRH14660
KRH49772
KRH50231
KRH71186
KRH73488

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64060.1	KRG89230	AT4G33950.1	19716822
AT1G64060.1	KRH49772	AT4G33950.1	19716822
AT1G64060.1	KRH50231	AT4G33950.1	19716822
AT1G64060.1	KRH71186	AT4G33950.1	19716822
AT1G64060.1	KRH14660	AT5G21326.1	23162070
AT1G64060.1	KRH73488	AT5G21326.1	23162070

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77593	Soybean	cytosol	97.09	97.09
KRH41250	Soybean	cytosol	85.76	84.48
KRH59983	Soybean	cytosol, nucleus, plasma membrane	85.54	84.27
PGSC0003DMT400032088	Potato	cytosol, nucleus, peroxisome	15.75	81.56
VIT_02s0025g00510.t01	Wine grape	cytosol	81.34	79.96
AT1G64060.1	Thale cress	cytosol	77.56	76.17
Bra027764.1-P	Field mustard	mitochondrion	77.56	75.84
Solyc08g081690.2.1	Tomato	cytosol	78.75	75.8
CDY08347	Canola	mitochondrion	77.13	75.74
GSMUA_Achr9P05450_001	Banana	mitochondrion	71.09	75.66
GSMUA_Achr6P31850_001	Banana	mitochondrion	70.66	73.43
CDY38202	Canola	mitochondrion	74.33	73.06
EES01429	Sorghum	mitochondrion	70.87	69.6
Zm00001d043543_P002	Maize	mitochondrion	70.77	69.57
TraesCS3B01G314000.2	Wheat	mitochondrion	70.12	68.86
TraesCS3D01G279900.1	Wheat	mitochondrion	70.12	68.71
Zm00001d038762_P001	Maize	plastid	70.23	68.67
HORVU3Hr1G069690.1	Barley	mitochondrion	8.95	68.59
KXG22389	Sorghum	mitochondrion	70.12	67.92
TraesCS1A01G347700.1	Wheat	mitochondrion	69.26	66.81
TraesCS3A01G280200.1	Wheat	mitochondrion	70.23	66.7
TraesCS1D01G350600.1	Wheat	mitochondrion	69.47	66.53
TraesCS1B01G362200.1	Wheat	mitochondrion	69.36	66.15
KRH33894	Soybean	cytosol	54.26	60.97
KRG92895	Soybean	extracellular, mitochondrion	54.91	57.26
KRH68525	Soybean	cytosol	53.83	56.38
KRG96816	Soybean	cytosol	53.51	55.92
KRH37549	Soybean	cytosol	55.77	55.71
KRH12608	Soybean	cytosol	55.88	55.34
KRH63901	Soybean	cytosol, nucleus, plasma membrane	55.02	54.96
KRH41026	Soybean	mitochondrion	52.21	54.5
KRH59706	Soybean	cytosol	52.43	54.12
KRH54051	Soybean	cytosol, nucleus, plasma membrane	54.58	53.77
Os01t0734200-00	Rice	mitochondrion, nucleus	17.8	52.05
KRH49079	Soybean	cytosol	46.39	50.06
KRH03132	Soybean	plastid	39.91	45.07
KRH56816	Soybean	plastid	39.7	44.88
KRH35246	Soybean	plasma membrane	15.32	20.23
KRH03224	Soybean	peroxisome	14.78	19.0
KRH48086	Soybean	plasma membrane	14.67	18.94
KRH00822	Soybean	plasma membrane	14.56	18.83
KRH06603	Soybean	plasma membrane	14.46	18.66
KRH35248	Soybean	plasma membrane	14.35	18.65
KRH57132	Soybean	plasma membrane	12.95	18.43
KRH36697	Soybean	plasma membrane	14.24	17.98
KRH11700	Soybean	plasma membrane	13.81	17.49

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	EntrezGene:100775988	Gene3D:2.40.30.10	EMBL:ACUP02006735	ncoils:Coil
InterPro:Cyt_b245_heavy_chain	InterPro:EF-hand-dom_pair	InterPro:EF_hand_dom	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom
InterPro:Fe_red_NAD-bd_6	EnsemblPlantsGene:GLYMA_11G020700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488
GO:GO:0005509	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016491	GO:GO:0050664	GO:GO:0055114	GO:GO:0098869	UniProt:I1LGC3
InterPro:IPR002048	InterPro:IPR017927	EnsemblPlants:KRH27880	ProteinID:KRH27880	ProteinID:KRH27880.1	InterPro:NADPH_Ox
PFAM:PF01794	PFAM:PF08022	PFAM:PF08030	PFAM:PF08414	PRINTS:PR00466	PFscan:PS50222
PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF66	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF47473	SUPFAM:SSF52343
SUPFAM:SSF63380	TMHMM:TMhelix	UniParc:UPI000233C84F	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:-:1456226..1467091

Molecular Weight (calculated)

106014.0 Da

IEP (calculated)

9.409

GRAVY (calculated)

-0.268

Length

927 amino acids

Sequence
(BLAST)

001: MNGAPKHERR WASDTVPEMA FVSAGTSPGT EYNSVTDEYV EVTLDVQDDH TIVLRGVEPV TVVNVDDGVA TSGNETPASS AWSPSIRRSS PNRWRQFSQE
101: LKAEAVAKAR QFSQELKAEL RWFSWSQGGS EAALVARDLR KQRAQLERNR SDTKKALRGL KFISSKSNGV DAWNEVQSNF YSLAKDGYLY RTDFAQCIGM
201: KDSKEFALEL FDALSRRRRL KFEKISRDEL NEFWSQITDQ SFDSRLQIFF DMVDKNEDGR IIEEEVKEII MLSASANKLS RLKEQAEEYA ALIMEELDPE
301: RLGYIELWQL ETLLLQKDTY LNYSQALSYT SQALSQNLQG LRARSPIRRM SRRMLYYLQE NWRRLWVLAL WISAMIGLFT WKFIEYKRKN AYHIMGNCLL
401: AAKGAAETLK FNMALILLPV CRNTITWLRS TKLAYVAPFD DNINFHKTIA AAVMIGVILH AGNHLACDFP RLVSSSEKDY KTYLDGVFGD HRPSYGDLVK
501: GVEGVTGILM VILMAIAFTL ATKWFRRNLI KLPKPFNRLT GFNAFWYSHH LFVIVYVLLI IHGVSLYLER RWHRQTTWMY LAVPILLYAG ERTLRFFRSG
601: FYTVRLIKVA IYPGNVLTLQ ISKPSQFRYK SGQYMFVQCP AVSPFEWHPF SITSAPDDDY LSVHIRQLGD WTQELKRVFS AACEPPVAGK SGLLRADETT
701: KKCLPKLRID GPYGAPAQDY RNYDVLLLVG LGIGATPFIS ILKDLLNNII KMEELADSVS DSSRGSDLST GSADSISSNK ISPKRKKTLK TTNAYFYWVT
801: REQGSFDWFK GVMNEVAELD QRGVIEMHNY LTSVYEEGDA RSALITMVQA LNHAKNGVDI VSGTRVRTHF ARPNWKKVFS RICSKHCNGR IGVFYCGAPV
901: LAKELSKLCF EFNEKGQTKF EFHKEHF

Best Arabidopsis Sequence Match ( AT1G64060.1 )
(BLAST)

001: MKPFSKNDRR RWSFDSVSAG KTAVGSASTS PGTEYSINGD QEFVEVTIDL QDDDTIVLRS VEPATAINVI GDISDDNTGI MTPVSISRSP TMKRTSSNRF
101: RQFSQELKAE AVAKAKQLSQ ELKRFSWSRS FSGNLTTTST AANQSGGAGG GLVNSALEAR ALRKQRAQLD RTRSSAQRAL RGLRFISNKQ KNVDGWNDVQ
201: SNFEKFEKNG YIYRSDFAQC IGMKDSKEFA LELFDALSRR RRLKVEKINH DELYEYWSQI NDESFDSRLQ IFFDIVDKNE DGRITEEEVK EIIMLSASAN
301: KLSRLKEQAE EYAALIMEEL DPERLGYIEL WQLETLLLQK DTYLNYSQAL SYTSQALSQN LQGLRGKSRI HRMSSDFVYI MQENWKRIWV LSLWIMIMIG
401: LFLWKFFQYK QKDAFHVMGY CLLTAKGAAE TLKFNMALIL FPVCRNTITW LRSTRLSYFV PFDDNINFHK TIAGAIVVAV ILHIGDHLAC DFPRIVRATE
501: YDYNRYLFHY FQTKQPTYFD LVKGPEGITG ILMVILMIIS FTLATRWFRR NLVKLPKPFD RLTGFNAFWY SHHLFVIVYI LLILHGIFLY FAKPWYVRTT
601: WMYLAVPVLL YGGERTLRYF RSGSYSVRLL KVAIYPGNVL TLQMSKPTQF RYKSGQYMFV QCPAVSPFEW HPFSITSAPE DDYISIHIRQ LGDWTQELKR
701: VFSEVCEPPV GGKSGLLRAD ETTKKSLPKL LIDGPYGAPA QDYRKYDVLL LVGLGIGATP FISILKDLLN NIVKMEEHAD SISDFSRSSE YSTGSNGDTP
801: RRKRILKTTN AYFYWVTREQ GSFDWFKGVM NEVAELDQRG VIEMHNYLTS VYEEGDARSA LITMVQALNH AKNGVDIVSG TRVRTHFARP NWKKVLTKLS
901: SKHCNARIGV FYCGVPVLGK ELSKLCNTFN QKGSTKFEFH KEHF

Arabidopsis Description

RBOHFRespiratory burst oxidase homolog protein F [Source:UniProtKB/Swiss-Prot;Acc:O48538]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.