CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89230
KRH14660
KRH49772
KRH50231
KRH71186
KRH73488

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64060.1	KRG89230	AT4G33950.1	19716822
AT1G64060.1	KRH49772	AT4G33950.1	19716822
AT1G64060.1	KRH50231	AT4G33950.1	19716822
AT1G64060.1	KRH71186	AT4G33950.1	19716822
AT1G64060.1	KRH14660	AT5G21326.1	23162070
AT1G64060.1	KRH73488	AT5G21326.1	23162070

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27880	Soybean	cytosol	97.09	97.09
KRH59983	Soybean	cytosol, nucleus, plasma membrane	85.54	84.27
KRH41250	Soybean	cytosol	85.54	84.27
PGSC0003DMT400032088	Potato	cytosol, nucleus, peroxisome	15.53	80.45
VIT_02s0025g00510.t01	Wine grape	cytosol	81.45	80.06
AT1G64060.1	Thale cress	cytosol	77.35	75.95
Solyc08g081690.2.1	Tomato	cytosol	78.75	75.8
CDY08347	Canola	mitochondrion	77.13	75.74
Bra027764.1-P	Field mustard	mitochondrion	77.45	75.74
GSMUA_Achr9P05450_001	Banana	mitochondrion	70.87	75.43
GSMUA_Achr6P31850_001	Banana	mitochondrion	70.33	73.09
CDY38202	Canola	mitochondrion	74.22	72.96
HORVU3Hr1G069690.1	Barley	mitochondrion	9.17	70.25
EES01429	Sorghum	mitochondrion	71.09	69.81
Zm00001d043543_P002	Maize	mitochondrion	70.87	69.67
TraesCS3B01G314000.2	Wheat	mitochondrion	70.12	68.86
Zm00001d038762_P001	Maize	plastid	70.33	68.78
TraesCS3D01G279900.1	Wheat	mitochondrion	70.12	68.71
KXG22389	Sorghum	mitochondrion	70.44	68.23
TraesCS1A01G347700.1	Wheat	mitochondrion	69.47	67.01
TraesCS1D01G350600.1	Wheat	mitochondrion	69.69	66.74
TraesCS3A01G280200.1	Wheat	mitochondrion	70.23	66.7
TraesCS1B01G362200.1	Wheat	mitochondrion	69.58	66.36
KRH33894	Soybean	cytosol	54.15	60.85
KRG92895	Soybean	extracellular, mitochondrion	54.58	56.92
KRH68525	Soybean	cytosol	53.94	56.5
KRG96816	Soybean	cytosol	53.61	56.03
KRH37549	Soybean	cytosol	55.99	55.93
KRH12608	Soybean	cytosol	55.99	55.45
KRH63901	Soybean	cytosol, nucleus, plasma membrane	55.02	54.96
KRH41026	Soybean	mitochondrion	52.0	54.28
KRH59706	Soybean	cytosol	52.21	53.9
KRH54051	Soybean	cytosol, nucleus, plasma membrane	54.58	53.77
Os01t0734200-00	Rice	mitochondrion, nucleus	18.02	52.68
KRH49079	Soybean	cytosol	46.49	50.17
KRH03132	Soybean	plastid	40.02	45.19
KRH56816	Soybean	plastid	39.81	45.0
KRH35246	Soybean	plasma membrane	15.1	19.94
KRH03224	Soybean	peroxisome	14.67	18.86
KRH48086	Soybean	plasma membrane	14.35	18.52
KRH57132	Soybean	plasma membrane	12.95	18.43
KRH00822	Soybean	plasma membrane	14.24	18.41
KRH35248	Soybean	plasma membrane	14.13	18.37
KRH06603	Soybean	plasma membrane	14.13	18.25
KRH36697	Soybean	plasma membrane	14.24	17.98
KRH11700	Soybean	plasma membrane	13.81	17.49

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	EntrezGene:100805517	Gene3D:2.40.30.10	EMBL:ACUP02000680	ncoils:Coil
InterPro:Cyt_b245_heavy_chain	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd
InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6	EnsemblPlantsGene:GLYMA_01G222700	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0050664	GO:GO:0055114	GO:GO:0098869
UniProt:I1JAA1	InterPro:IPR002048	InterPro:IPR017927	EnsemblPlants:KRH77593	ProteinID:KRH77593	ProteinID:KRH77593.1
InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030	PFAM:PF08414	PRINTS:PR00466
ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF66	InterPro:Riboflavin_synthase-like_b-brl
SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix	UniParc:UPI0002337608	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:55162789..55172765

Molecular Weight (calculated)

106079.0 Da

IEP (calculated)

9.223

GRAVY (calculated)

-0.277

Length

927 amino acids

Sequence
(BLAST)

001: MNGAPKHERR WASDTVPEMA FVSAGTSPGT EYNSVTDEYV EVTLDVHDDH TIVLRDVEPV TVVNIDDGVA TSGNETPTSS AWSPSIRRSS PNRWRQFSQE
101: LKAEAVAKAR QFSQELKAEL RWFSWSQGGS ETALVARDLR KQRAQLDRNR SGTKKALRGL KFISSKSNGA DAWNEVQSNF YSLAKDGYLY RTDFAQCIGM
201: KDSKEFALEL FDALSRRRRL KVEKISRDEL NEFWSQITDQ SFDSRLQIFF DMVDKNEDGR ITEEEVKEII MLSASANKLS RLKEQAEEYA ALIMEELDPE
301: RLGYIELWQL ETLLLQKDTY LNYSQALSYT SQALSQNLQG LRARSPIRRM SRRMLYYLQE NWRRLWILAL WISAMIGLFT WKFIEYKRKN AYHIMGYCLL
401: AAKGAAETLK FNMALILLPV CRNTITWLRS TKLAYIAPFD DNINFHKTIA AAVVIGVILH AGNHLACDFP RLVNSSEKDY ETYLDGVFGD HKPSYGDLIK
501: GVEGVTGILM VILMAIAFTL ATKWFRRNLV KLPKPFNRLT GFNAFWYSHH LFVIVYVLLT IHGVYLYLER RWHLQTTWMY LAVPILLYAG ERTLRFFRSG
601: FYTVRLIKVA IYPGNVLTLQ MSKPSQFRYK SGQYMFVQCP AVSPFEWHPF SITSAPDDDY LSVHIRQLGD WTQELKRVFS AACEPPLAGK SGLLRADETT
701: KKCLPKLRID GPYGAPAQDY RNYDVLLLVG LGIGATPFIS ILKDLLNNII KMEELADSVS DSSRGSDLST GSADSLSSNK ISPKRKKTLK TTNAYFYWVT
801: REQGSFDWFK GVMNEVAELD QRGVIEMHNY LTSVYEEGDA RSALITMVQA LNHAKNGVDI VSGTRLRTHF AKPNWKKVFS RICSKHCNGR IGVFYCGAPV
901: LAKELSKLCF EFNEKGQTKF EFHKEHF

Best Arabidopsis Sequence Match ( AT1G64060.1 )
(BLAST)

001: MKPFSKNDRR RWSFDSVSAG KTAVGSASTS PGTEYSINGD QEFVEVTIDL QDDDTIVLRS VEPATAINVI GDISDDNTGI MTPVSISRSP TMKRTSSNRF
101: RQFSQELKAE AVAKAKQLSQ ELKRFSWSRS FSGNLTTTST AANQSGGAGG GLVNSALEAR ALRKQRAQLD RTRSSAQRAL RGLRFISNKQ KNVDGWNDVQ
201: SNFEKFEKNG YIYRSDFAQC IGMKDSKEFA LELFDALSRR RRLKVEKINH DELYEYWSQI NDESFDSRLQ IFFDIVDKNE DGRITEEEVK EIIMLSASAN
301: KLSRLKEQAE EYAALIMEEL DPERLGYIEL WQLETLLLQK DTYLNYSQAL SYTSQALSQN LQGLRGKSRI HRMSSDFVYI MQENWKRIWV LSLWIMIMIG
401: LFLWKFFQYK QKDAFHVMGY CLLTAKGAAE TLKFNMALIL FPVCRNTITW LRSTRLSYFV PFDDNINFHK TIAGAIVVAV ILHIGDHLAC DFPRIVRATE
501: YDYNRYLFHY FQTKQPTYFD LVKGPEGITG ILMVILMIIS FTLATRWFRR NLVKLPKPFD RLTGFNAFWY SHHLFVIVYI LLILHGIFLY FAKPWYVRTT
601: WMYLAVPVLL YGGERTLRYF RSGSYSVRLL KVAIYPGNVL TLQMSKPTQF RYKSGQYMFV QCPAVSPFEW HPFSITSAPE DDYISIHIRQ LGDWTQELKR
701: VFSEVCEPPV GGKSGLLRAD ETTKKSLPKL LIDGPYGAPA QDYRKYDVLL LVGLGIGATP FISILKDLLN NIVKMEEHAD SISDFSRSSE YSTGSNGDTP
801: RRKRILKTTN AYFYWVTREQ GSFDWFKGVM NEVAELDQRG VIEMHNYLTS VYEEGDARSA LITMVQALNH AKNGVDIVSG TRVRTHFARP NWKKVLTKLS
901: SKHCNARIGV FYCGVPVLGK ELSKLCNTFN QKGSTKFEFH KEHF

Arabidopsis Description

RBOHFRespiratory burst oxidase homolog protein F [Source:UniProtKB/Swiss-Prot;Acc:O48538]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.