Factsheet for TraesCS1D01G350600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
peroxisome 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G187300.1
TraesCS4B01G131000.1
TraesCS4D01G126200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64060.1	TraesCS4A01G187300.1	AT5G21326.1	23162070
AT1G64060.1	TraesCS4B01G131000.1	AT5G21326.1	23162070
AT1G64060.1	TraesCS4D01G126200.1	AT5G21326.1	23162070

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G362200.1	Wheat	mitochondrion	98.76	98.35
TraesCS1A01G347700.1	Wheat	mitochondrion	97.62	98.34
Zm00001d038762_P001	Maize	plastid	86.47	88.29
Os05t0528000-01	Rice	mitochondrion	86.16	87.7
KXG22389	Sorghum	mitochondrion	86.57	87.57
HORVU1Hr1G081950.8	Barley	plastid	85.33	84.98
TraesCS3D01G279900.1	Wheat	mitochondrion	79.24	81.08
GSMUA_Achr9P05450_001	Banana	mitochondrion	68.7	76.35
GSMUA_Achr6P31850_001	Banana	mitochondrion	68.49	74.33
VIT_02s0025g00510.t01	Wine grape	cytosol	70.66	72.53
KRH59983	Soybean	cytosol, nucleus, plasma membrane	68.91	70.88
KRH41250	Soybean	cytosol	68.7	70.67
KRH77593	Soybean	cytosol	66.74	69.69
KRH27880	Soybean	cytosol	66.53	69.47
Solyc08g081690.2.1	Tomato	cytosol	68.08	68.43
CDY08347	Canola	mitochondrion	66.53	68.22
AT1G64060.1	Thale cress	cytosol	66.53	68.22
PGSC0003DMT400032088	Potato	cytosol, nucleus, peroxisome	12.6	68.16
Bra027764.1-P	Field mustard	mitochondrion	66.53	67.93
CDY38202	Canola	mitochondrion	63.64	65.32
TraesCS5D01G306400.1	Wheat	cytosol	51.76	54.63
TraesCS4D01G324800.1	Wheat	cytosol	51.76	54.58
TraesCS1D01G289300.2	Wheat	mitochondrion	44.73	54.12
TraesCS4D01G352200.3	Wheat	cytosol	46.8	53.48
TraesCS5D01G105900.1	Wheat	cytosol	47.52	53.18
TraesCS3D01G347900.2	Wheat	cytosol	45.56	52.07
TraesCS5D01G222100.1	Wheat	mitochondrion	53.0	51.61
TraesCS6D01G164500.1	Wheat	mitochondrion, plasma membrane	50.52	51.47
TraesCS3D01G187300.2	Wheat	cytosol	47.73	51.33
TraesCS1D01G284800.1	Wheat	plastid	45.87	44.44
TraesCS1D01G285000.1	Wheat	cytosol	39.57	42.18
TraesCS1D01G283600.1	Wheat	cytosol, peroxisome, plasma membrane	33.99	40.62
TraesCS1D01G284900.1	Wheat	cytosol	43.91	36.64
TraesCS2D01G393700.1	Wheat	plasma membrane	13.74	18.42
TraesCS2D01G311100.1	Wheat	plasma membrane	14.05	18.21

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	Gene3D:2.40.30.10	ncoils:Coil	InterPro:Cyt_b245_heavy_chain	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6
GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016491	GO:GO:0050664	GO:GO:0055114
InterPro:IPR002048	InterPro:IPR017927	InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030
PFAM:PF08414	PRINTS:PR00466	ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972
PANTHER:PTHR11972:SF66	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS1D01G350600	EnsemblPlants:TraesCS1D01G350600.1	TIGR:cd00051	TIGR:cd06186	SEG:seg	:

Description

No Description!

Coordinates

chr1D:-:436189684..436197502

Molecular Weight (calculated)

108576.0 Da

IEP (calculated)

9.505

GRAVY (calculated)

-0.226

Length

968 amino acids

Sequence
(BLAST)

001: MRGVAGGGGA PGRPRWGGGS GATTPRSLST GSSPRGSDRS SDDGEELVEV TLDLQEDDTI VLRSVEPAAA ANANAAASAA ASSSGASPSV MGWSAEPTPP
101: PGAGPSRSRS PAIRRTSSHR LLQFSQELKA GVSRAKQISQ DLTKRFTRTQ SRAALAEPPQ PPPAAHPPSG IESALAARAE RRQRAQLDRT KSTAQRAIKG
201: LRFISGNTKA SNNAWIEVQR NFDRLALDGR LSRADFPQCI GMMESKEFAM ELFDTLCRRR QMQSDHINRE ELREIWSQIT DNSFDSRLQI FFDMVDKDAD
301: GHITEAEVKE IIMLSASANK LARLKEQAEE YAALIMEELD PEGLGYIELW QLETLLLQKD TYVNYSQALS YTSQALSQNL AGLRHKSPIR KMSSKLSYYL
401: EDNWKRLWVL ALWIGIMAGL FIWKFIQYRN RYVFSVMGYC VTIAKGAAET LKLNMALILL PVCRNTITWL RNTRAARALP FDDNINFHKT IAAAIVVGVI
501: LHAGNHLACD FPRLIDSSDE TYAPLRQYFG ETKPTYLALV RGVEGVTGVI MVVCMLIAFT LATRWFRRSL VKLPKPFDKL TGFNAFWYSH HLFIIVYISL
601: VIHGERLYLI LDWYKRTTWM YLAVPVGLYV GERTLRFFRS GSYSVRILKV AIYPGNVLTL QMSKPPTFRY KSGQYMFVQC PAVSPFEWHP FSITSAPGDD
701: FLSIHVRQLG DWTRELKRVF SAACEPPMNG KSGLLRADEN TKKTFPKLLI DGPYGSPAQD YSKYDVLLLV GLGIGATPFI SILKDLINNI IKMEEEDEAS
801: TDLYPPIGPS KASVDLDTLM RITSKPKRVF KTTNAYFYWV TREQGSFDWF KGIMNEIAEL DQRNIIEMHN YLTSVYEEGD ARSALITMLQ ALNHAKNGVD
901: VVSGTRVRTH FARPNFKRVL SKVASKHPYA KIGVFYCGAP VLAQELSNLC HEFNGKCTTK FEFHKEHF

Best Arabidopsis Sequence Match ( AT1G64060.1 )
(BLAST)

001: MKPFSKNDRR RWSFDSVSAG KTAVGSASTS PGTEYSINGD QEFVEVTIDL QDDDTIVLRS VEPATAINVI GDISDDNTGI MTPVSISRSP TMKRTSSNRF
101: RQFSQELKAE AVAKAKQLSQ ELKRFSWSRS FSGNLTTTST AANQSGGAGG GLVNSALEAR ALRKQRAQLD RTRSSAQRAL RGLRFISNKQ KNVDGWNDVQ
201: SNFEKFEKNG YIYRSDFAQC IGMKDSKEFA LELFDALSRR RRLKVEKINH DELYEYWSQI NDESFDSRLQ IFFDIVDKNE DGRITEEEVK EIIMLSASAN
301: KLSRLKEQAE EYAALIMEEL DPERLGYIEL WQLETLLLQK DTYLNYSQAL SYTSQALSQN LQGLRGKSRI HRMSSDFVYI MQENWKRIWV LSLWIMIMIG
401: LFLWKFFQYK QKDAFHVMGY CLLTAKGAAE TLKFNMALIL FPVCRNTITW LRSTRLSYFV PFDDNINFHK TIAGAIVVAV ILHIGDHLAC DFPRIVRATE
501: YDYNRYLFHY FQTKQPTYFD LVKGPEGITG ILMVILMIIS FTLATRWFRR NLVKLPKPFD RLTGFNAFWY SHHLFVIVYI LLILHGIFLY FAKPWYVRTT
601: WMYLAVPVLL YGGERTLRYF RSGSYSVRLL KVAIYPGNVL TLQMSKPTQF RYKSGQYMFV QCPAVSPFEW HPFSITSAPE DDYISIHIRQ LGDWTQELKR
701: VFSEVCEPPV GGKSGLLRAD ETTKKSLPKL LIDGPYGAPA QDYRKYDVLL LVGLGIGATP FISILKDLLN NIVKMEEHAD SISDFSRSSE YSTGSNGDTP
801: RRKRILKTTN AYFYWVTREQ GSFDWFKGVM NEVAELDQRG VIEMHNYLTS VYEEGDARSA LITMVQALNH AKNGVDIVSG TRVRTHFARP NWKKVLTKLS
901: SKHCNARIGV FYCGVPVLGK ELSKLCNTFN QKGSTKFEFH KEHF

Arabidopsis Description

RBOHFRespiratory burst oxidase homolog protein F [Source:UniProtKB/Swiss-Prot;Acc:O48538]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.