Factsheet for TraesCS1D01G284900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G295200.1	Wheat	cytosol	88.02	83.48
HORVU1Hr1G072140.1	Barley	cytosol	64.91	81.05
TraesCS1D01G285000.1	Wheat	cytosol	54.05	69.05
TraesCS4D01G324800.1	Wheat	cytosol	52.33	66.12
TraesCS5D01G306400.1	Wheat	cytosol	51.03	64.56
GSMUA_Achr6P11760_001	Banana	golgi	22.33	63.48
TraesCS1D01G284800.1	Wheat	plastid	54.05	62.76
Os11t0537400-01	Rice	plasma membrane	2.33	61.36
Zm00001d052653_P003	Maize	cytosol, plastid	50.43	60.25
GSMUA_Achr6P16270_001	Banana	cytosol	43.97	59.23
Zm00001d007430_P002	Maize	cytosol	41.47	58.52
GSMUA_Achr10P...	Banana	cytosol	46.21	58.32
GSMUA_Achr2P21340_001	Banana	cytosol, peroxisome, plasma membrane	41.72	58.03
Zm00001d007421_P004	Maize	cytosol	47.07	57.59
GSMUA_Achr6P11770_001	Banana	cytosol	19.91	57.46
OQU83587	Sorghum	plastid	50.09	53.85
Zm00001d007426_P001	Maize	cytosol, plastid	45.78	53.37
KRH63901	Soybean	cytosol, nucleus, plasma membrane	42.67	53.34
VIT_19s0014g02830.t01	Wine grape	cytosol	38.45	53.1
VIT_01s0150g00440.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	42.24	53.03
Bra020724.1-P	Field mustard	cytosol, nucleus, plasma membrane, plastid	42.07	52.99
Bra037520.1-P	Field mustard	cytosol	42.07	52.93
TraesCS4D01G352200.3	Wheat	cytosol	38.36	52.54
Solyc06g068680.2.1	Tomato	cytosol	38.71	52.39
KRH54051	Soybean	cytosol, nucleus, plasma membrane	42.33	52.18
PGSC0003DMT400036734	Potato	cytosol, nucleus, plasma membrane	42.07	52.03
AT5G47910.1	Thale cress	cytosol, peroxisome, plasma membrane	41.29	52.01
Solyc03g117980.2.1	Tomato	nucleus	41.98	51.92
TraesCS5D01G105900.1	Wheat	cytosol	38.28	51.33
AT5G51060.1	Thale cress	cytosol	40.0	51.27
KRH41026	Soybean	mitochondrion	39.14	51.13
VIT_01s0150g00450.t01	Wine grape	cytosol	40.34	50.7
KRH59706	Soybean	cytosol	39.14	50.56
TraesCS3D01G187300.2	Wheat	cytosol	39.05	50.33
Bra029194.1-P	Field mustard	cytosol	39.48	50.33
Bra019191.1-P	Field mustard	cytosol, nucleus, plasma membrane	35.78	49.82
Bra009266.1-P	Field mustard	cytosol	38.53	49.56
AT4G25090.1	Thale cress	cytosol	35.95	49.12
AT5G07390.1	Thale cress	cytosol	38.19	49.11
Bra019189.1-P	Field mustard	cytosol, nucleus, plasma membrane	34.22	47.66
TraesCS1D01G289300.2	Wheat	mitochondrion	31.64	45.88
TraesCS3D01G279900.1	Wheat	mitochondrion	35.86	43.97
TraesCS3D01G347900.2	Wheat	cytosol	32.07	43.92
TraesCS1D01G350600.1	Wheat	mitochondrion	36.64	43.91
TraesCS6D01G164500.1	Wheat	mitochondrion, plasma membrane	34.4	42.0
Bra011911.1-P	Field mustard	cytosol	23.1	41.61
TraesCS5D01G222100.1	Wheat	mitochondrion	34.66	40.44
TraesCS1D01G283600.1	Wheat	cytosol, peroxisome, plasma membrane	25.52	36.54
VIT_03s0063g00950.t01	Wine grape	extracellular, vacuole	6.21	33.8
Bra013862.1-P	Field mustard	cytosol	6.98	31.27
CDY22645	Canola	cytosol	5.6	28.76
TraesCS2D01G393700.1	Wheat	plasma membrane	10.43	16.76
TraesCS2D01G311100.1	Wheat	plasma membrane	10.26	15.93

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	ncoils:Coil	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6
GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0050664	GO:GO:0055114	InterPro:IPR002048	InterPro:IPR017927
InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030	PFAM:PF08414	ScanProsite:PS00018
PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF64	InterPro:Riboflavin_synthase-like_b-brl	SMART:SM00054
SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1D01G284900	EnsemblPlants:TraesCS1D01G284900.1
TIGR:cd00051	TIGR:cd06186	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:+:382916206..382927373

Molecular Weight (calculated)

131936.0 Da

IEP (calculated)

8.898

GRAVY (calculated)

-0.415

Length

1160 amino acids

Sequence
(BLAST)

0001: MPSRVGADDA RGGPGVGETV DASGGVRERA VPPGNRSAAR KTARFAEPVS APRGSGNVDD DDGDGVEITF DMRDYTNAVH RVRPVARGED PGVKLLARTP
0101: EKRESSSGYG ALKNATTRIQ QETRRVASLK RRGGGFDRSM PSAPARALEA LKFVSGTDAS DGWTDAERFY DRNARLPRSM FGQCIGMEEA AFAGELFDTL
0201: GRRRRISGDS IDKAELREFW DQISAPSYES RLQLFFDMVD KDADGRISQV EFKQIIMLSA SANKLTVGEQ DSEECARLIM EKLDPDSLGY IELYDLETLL
0301: VKLSSTTNGD EPSKPMAEPN PLRRWYRHAR YFLKDNWRPC WAASLNRRGG GFDRSMPSAP ARALEGLKFV SGTDASDGWT DAERFFDRNA RLPRSMFGQC
0401: IGMKEAAFAG ELFDTLGRQR RISGDNIDKE ELLEFWDQIS DRSYVGRLQL FFDMVDKDAD GRISQVEFKQ IITLSASANK LKVGEQDSEE CARLIMEKLD
0501: PDGLGYIELY DLEKLLVKPS SELMPIEMTT NGDEPSKPMV ELNPLRRWYR HARYFLKDNW RRCWVMLLWL SICVGLFAWK FVQYRHRPVF QVMGYCVCVA
0601: KGGAETLKFN MALTLLPVCR NVITWLRSRT TAGRFVPFND NLNFHKVIAV GISVGAGLHV VSHLACDFPR LLHATDDEYE PMKQFFGDVK PPNYWWFVKG
0701: TEGWTGLVML VLMAIAFTLA TGRFRNRTPW LPKPKKQDDN LPQHKKRDNL PGLLHRLTEY GSASRNRLTM LFYTLLNRFT GYNAFLYTHH LFVIVYALLI
0801: VHGHFLYLTK KWQKKTTWMY LAVPMIVYAC ERLTRTLRSR VRAVHKVKAV VHPEPAALLS LHLSKPEGFR YKSGQYIFVK CPNVSSFEWH PFSITSAPED
0901: DYVSVHIKEM GDWTKDLRDA FFKVCEPLTE EKKTEILRVE YDHDKAMPTL GGRLKYPTVL IDGPYGAPAQ DYKQYETLLL VGLGIGATPM ISIIKDIINN
1001: MKRLPGDIES GNPSDGSRSS SFRTRRAYFY WITREQESLE WFHGIMDEVA EMDKQGVIEL HVHCTSVHGE GDARSAVITV AQSLNHDKHG IDIISGTRVK
1101: TSFGRANWSE VYRHIARQNQ RKRVGVFYCG MPALMKELRK LAKVSSRETS TTFEFHKENF

Best Arabidopsis Sequence Match ( AT1G09090.2 )
(BLAST)

001: MREEEMESSS EGETNKISRC KATGSDNPDE DYVEITLEVR DETINTMKAK ATLRSVLSGR LKTMVKSLSF ASRRLDRSKS FGAMFALRGL RFIAKNDAVG
101: RGWDEVAMRF DKLAVEGKLP KSKFGHCIGM VESSEFVNEL FEALVRRRGT TSSSITKTEL FEFWEQITGN SFDDRLQIFF DMVDKNLDGR ITGDEVKEII
201: ALSASANKLS KIKENVDEYA ALIMEELDRD NLGYIELHNL ETLLLQVPSQ SNNSPSSANK RALNKMLSQK LIPTKDRNPV KRFAMNISYF FLENWKRIWV
301: LTLWISICIT LFTWKFLQYK RKTVFEVMGY CVTVAKGSAE TLKFNMALIL LPVCRNTITW LRTKSKLIGS VVPFDDNINF HKVVAFGIAV GIGLHAISHL
401: ACDFPRLLHA KNVEFEPMKK FFGDERPENY GWFMKGTDGW TGVTMVVLML VAYVLAQSWF RRNRANLPKS LKRLTGFNAF WYSHHLFVIV YVLLIVHGYF
501: VYLSKEWYHK TTWMYLAVPV LLYAFERLIR AFRPGAKAVK VLKVAVYPGN VLSLYMSKPK GFKYTSGQYI YINCSDVSPL QWHPFSITSA SGDDYLSVHI
601: RTLGDWTSQL KSLYSKVCQL PSTSQSGLFI ADIGQANNIT RFPRLLIDGP YGAPAQDYRN YDVLLLVGLG IGATPLISII RDVLNNIKNQ NSIERGTNQH
701: IKNYVATKRA YFYWVTREQG SLEWFSEVMN EVAEYDSEGM IELHNYCTSV YEEGDARSAL ITMLQSLHHA KSGIDIVSGT RVRTHFARPN WRSVFKHVAV
801: NHVNQRVGVF YCGNTCIIGE LKRLAQDFSR KTTTKFEFHK ENF

Arabidopsis Description

RBOHBRespiratory burst oxidase homolog protein B [Source:UniProtKB/Swiss-Prot;Acc:Q9SBI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.