Factsheet for Solyc03g117980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036734	Potato	cytosol, nucleus, plasma membrane	98.08	98.08
GSMUA_Achr6P11760_001	Banana	golgi	34.12	78.43
GSMUA_Achr10P...	Banana	plasma membrane	42.54	76.58
Os11t0537400-01	Rice	plasma membrane	3.41	72.73
Solyc06g068680.2.1	Tomato	cytosol	65.67	71.88
GSMUA_Achr6P16270_001	Banana	cytosol	63.22	68.87
GSMUA_Achr10P...	Banana	cytosol	67.06	68.44
TraesCS4B01G327800.2	Wheat	cytosol	66.52	68.05
TraesCS4D01G324800.1	Wheat	cytosol	66.52	67.97
TraesCS5A01G499900.1	Wheat	cytosol	66.52	67.9
GSMUA_Achr10P...	Banana	nucleus, plastid	20.04	67.38
GSMUA_Achr6P11770_001	Banana	cytosol	28.78	67.16
GSMUA_Achr2P21340_001	Banana	cytosol, peroxisome, plasma membrane	59.38	66.79
TraesCS5B01G299000.1	Wheat	cytosol	64.39	65.8
TraesCS5D01G306400.1	Wheat	cytosol	64.18	65.65
TraesCS5A01G301700.1	Wheat	cytosol	64.29	65.54
HORVU4Hr1G081670.1	Barley	cytosol	67.27	64.59
Solyc01g099620.2.1	Tomato	cytosol	59.38	64.39
Zm00001d052653_P003	Maize	cytosol, plastid	66.1	63.85
Zm00001d007421_P004	Maize	cytosol	60.13	59.49
OQU83587	Sorghum	plastid	66.52	57.83
TraesCS1B01G295100.1	Wheat	plasma membrane	40.3	55.34
Zm00001d007430_P002	Maize	cytosol	48.4	55.23
HORVU1Hr1G091930.1	Barley	peroxisome, plasma membrane	26.97	54.88
HORVU1Hr1G072160.5	Barley	cytosol	54.05	54.22
TraesCS1A01G285700.1	Wheat	cytosol	53.52	53.75
Solyc05g025680.1.1	Tomato	plasma membrane	35.61	53.53
Zm00001d007426_P001	Maize	cytosol, plastid	56.29	53.07
TraesCS1A01G357100.1	Wheat	cytosol	36.35	52.38
TraesCS1B01G295300.1	Wheat	cytosol	46.7	51.41
HORVU1Hr1G072140.1	Barley	cytosol	50.85	51.35
Solyc08g081690.2.1	Tomato	cytosol	52.45	51.09
TraesCS1D01G284800.1	Wheat	plastid	53.84	50.55
Solyc07g042460.1.1	Tomato	cytosol	47.23	50.28
HORVU5Hr1G078630.1	Barley	cytosol	51.49	50.05
Solyc06g075570.1.1	Tomato	cytosol	43.18	48.8
Solyc11g072800.1.1	Tomato	cytosol	41.79	48.04
TraesCS1D01G285000.1	Wheat	cytosol	45.95	47.47
HORVU0Hr1G013380.4	Barley	plastid	36.67	43.77
TraesCS1D01G284900.1	Wheat	cytosol	51.92	41.98
TraesCS1B01G295200.1	Wheat	cytosol	51.17	39.25
VIT_03s0063g00950.t01	Wine grape	extracellular, vacuole	8.21	36.15
Solyc05g025690.1.1	Tomato	mitochondrion	9.28	35.95
Solyc01g094900.1.1	Tomato	cytosol, mitochondrion, plasma membrane, plastid	4.37	21.03
Solyc03g112320.2.1	Tomato	plasma membrane	12.05	20.36
Solyc01g094890.2.1	Tomato	plasma membrane	13.86	18.23
Solyc01g102610.2.1	Tomato	plastid	14.07	17.84
Solyc01g094910.2.1	Tomato	peroxisome, plasma membrane, plastid	13.54	17.66
Solyc06g036220.1.1	Tomato	plasma membrane	7.68	17.14

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	Gene3D:2.40.30.10	ncoils:Coil	InterPro:Cyt_b245_heavy_chain	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6
GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0050664	GO:GO:0055114	GO:GO:0098869	InterPro:IPR002048	InterPro:IPR017927	UniProt:K4BLU9
InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030	PFAM:PF08414	PRINTS:PR00466
ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF64	InterPro:Riboflavin_synthase-like_b-brl
SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380	EnsemblPlantsGene:Solyc03g117980.2	EnsemblPlants:Solyc03g117980.2.1	TMHMM:TMhelix
UniParc:UPI0002767A4D	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:66972887..66978652

Molecular Weight (calculated)

105313.0 Da

IEP (calculated)

9.444

GRAVY (calculated)

-0.311

Length

938 amino acids

Sequence
(BLAST)

001: MQNSENHHPH HHHHHSDTEV IGNDRASYSG PLSGPLNKRG GKKSARFNIP ESTDIGTSAG AGAKSNDDAY VEITLDVRED SVAVHSVKTA GGADVEDPEL
101: ALLAKGLEKK STLGASLVRN ASSRIRQVSQ ELKRLASLNK RPIPTGRFDR NKSAAAHALK GLKFISKTDG GAGWAAVEKR FDEITASTTG LLPRAKFGEC
201: IGMNKESKEF AGELYDALAR RRNITTDSIN KAQLKEFWDQ VADQSFDTRL QTFFDMVDKD ADGRITEEEV REIIGLSASA NRLSTIQKQS DEYAAMIMEE
301: LDPNNLGYIM IENLEMLLLQ APNQTVQRGG ESRNLSQMLS QKLKHTQEPN PLVRWYKSFK YFLLDNWQRV WVLLLWIGIM AGLFTWKYIQ YKQKAAYGVM
401: GPCVCLAKGA AETIKLNMAI ILLPVCRNTI TWLRNKTRLG SAVPFDDNLN FHKVIAVAVA LGVAIHGLAH LTCDFPRLLN ASEEAYEPMI YYFGEQPESY
501: WWFVKGVEGV TGIIMVILMA IAFTLATPWF RRGRVSFPKP FHKLTGFNAF WYSHHLFIIV YTLLIVHGEK LYITKTWYKR TTWMYLTVPL ALYAGERLLR
601: AFRSSIKAVK ILKVAVYPGN VLALHMSKPQ GYKYKSGQYM FVNCAAVSPF EWHPFSITSA PGDDYLSVHI RTLGDWTRQL KTVFSEVCQP PPNGKSGLLR
701: ADYLQGENNP NFPRVLIDGP YGAPAQDYKQ YEVVLLVGLG IGATPMISIV KDIVNNMKAM DEEENSLENG HGMSNAAQNA SPNMAQKRGK SGSASGRNSF
801: NTRRAYFYWV TREQGSFDWF KGIMNEAAEM DHKGVIEMHN YCTSVYEEGD ARSALITMLQ SLHHAKNGVD IVSGTRVKSH FAKPNWRNVY KRIALNHPEA
901: KVGVFYCGAP ALTKELKQHA LDFSHKTSTK FDFHKENF

Best Arabidopsis Sequence Match ( AT5G47910.1 )
(BLAST)

001: MKMRRGNSSN DHELGILRGA NSDTNSDTES IASDRGAFSG PLGRPKRASK KNARFADDLP KRSNSVAGGR GDDDEYVEIT LDIRDDSVAV HSVQQAAGGG
101: GHLEDPELAL LTKKTLESSL NNTTSLSFFR STSSRIKNAS RELRRVFSRR PSPAVRRFDR TSSAAIHALK GLKFIATKTA AWPAVDQRFD KLSADSNGLL
201: LSAKFWECLG MNKESKDFAD QLFRALARRN NVSGDAITKE QLRIFWEQIS DESFDAKLQV FFDMVDKDED GRVTEEEVAE IISLSASANK LSNIQKQAKE
301: YAALIMEELD PDNAGFIMIE NLEMLLLQAP NQSVRMGDSR ILSQMLSQKL RPAKESNPLV RWSEKIKYFI LDNWQRLWIM MLWLGICGGL FTYKFIQYKN
401: KAAYGVMGYC VCVAKGGAET LKFNMALILL PVCRNTITWL RNKTKLGTVV PFDDSLNFHK VIASGIVVGV LLHAGAHLTC DFPRLIAADE DTYEPMEKYF
501: GDQPTSYWWF VKGVEGWTGI VMVVLMAIAF TLATPWFRRN KLNLPNFLKK LTGFNAFWYT HHLFIIVYAL LIVHGIKLYL TKIWYQKTTW MYLAVPILLY
601: ASERLLRAFR SSIKPVKMIK VAVYPGNVLS LHMTKPQGFK YKSGQFMLVN CRAVSPFEWH PFSITSAPGD DYLSVHIRTL GDWTRKLRTV FSEVCKPPTA
701: GKSGLLRADG GDGNLPFPKV LIDGPYGAPA QDYKKYDVVL LVGLGIGATP MISILKDIIN NMKGPDRDSD IENNNSNNNS KGFKTRKAYF YWVTREQGSF
801: EWFKGIMDEI SELDEEGIIE LHNYCTSVYE EGDARVALIA MLQSLQHAKN GVDVVSGTRV KSHFAKPNWR QVYKKIAVQH PGKRIGVFYC GMPGMIKELK
901: NLALDFSRKT TTKFDFHKEN F

Arabidopsis Description

RBOHDRespiratory burst oxidase homolog protein D [Source:UniProtKB/Swiss-Prot;Acc:Q9FIJ0]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.