Factsheet for Solyc01g102610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
vacuole 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046925	Potato	plasma membrane	95.54	95.41
VIT_12s0035g02150.t01	Wine grape	plasma membrane	63.65	64.08
KRH11700	Soybean	plasma membrane	60.0	60.66
KRH36697	Soybean	plasma membrane	59.05	59.54
GSMUA_Achr11P...	Banana	plasma membrane	58.11	58.82
CDX71600	Canola	plasma membrane	58.24	58.16
CDY65711	Canola	plasma membrane	58.11	58.11
AT5G49730.1	Thale cress	plasma membrane	57.84	57.99
Bra037953.1-P	Field mustard	plasma membrane	57.97	57.97
AT5G49740.1	Thale cress	plasma membrane	58.11	57.56
TraesCS2D01G311100.1	Wheat	plasma membrane	54.19	53.68
TraesCS2B01G329600.1	Wheat	plasma membrane	54.05	53.55
TraesCS2A01G312600.1	Wheat	plasma membrane	54.05	53.48
Os04t0444800-02	Rice	plasma membrane	54.19	52.9
Zm00001d003559_P001	Maize	plasma membrane	53.51	52.11
EES10867	Sorghum	plasma membrane	52.3	50.52
HORVU2Hr1G077650.1	Barley	peroxisome, plastid	48.24	48.05
Solyc01g094900.1.1	Tomato	cytosol, mitochondrion, plasma membrane, plastid	10.95	41.54
Solyc03g112320.2.1	Tomato	plasma membrane	23.78	31.71
Solyc01g094910.2.1	Tomato	peroxisome, plasma membrane, plastid	30.0	30.88
Solyc01g094890.2.1	Tomato	plasma membrane	28.51	29.59
Solyc06g036220.1.1	Tomato	plasma membrane	15.54	27.38
Solyc05g025680.1.1	Tomato	plasma membrane	15.14	17.95
Solyc11g072800.1.1	Tomato	cytosol	17.03	15.44
Solyc07g042460.1.1	Tomato	cytosol	18.11	15.21
Solyc06g075570.1.1	Tomato	cytosol	16.89	15.06
Solyc06g068680.2.1	Tomato	cytosol	17.3	14.94
Solyc01g099620.2.1	Tomato	cytosol	17.43	14.91
Solyc03g117980.2.1	Tomato	nucleus	17.84	14.07
Solyc08g081690.2.1	Tomato	cytosol	17.7	13.6
Solyc05g025690.1.1	Tomato	mitochondrion	1.76	5.37

Protein Annotations

MapMan:25.4.2.1	MapMan:25.5.2.1	Gene3D:3.40.50.80	InterPro:Cyt_b245_heavy_chain	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd
InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491	GO:GO:0055114	InterPro:IPR017927
UniProt:K4B1I9	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030	PRINTS:PR00466	PFscan:PS51384
PANTHER:PTHR11972	PANTHER:PTHR11972:SF41	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF52343	SUPFAM:SSF63380	EnsemblPlantsGene:Solyc01g102610.2
EnsemblPlants:Solyc01g102610.2.1	TMHMM:TMhelix	UniParc:UPI0002767C6B	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:91372017..91376492

Molecular Weight (calculated)

83100.3 Da

IEP (calculated)

8.020

GRAVY (calculated)

0.393

Length

740 amino acids

Sequence
(BLAST)

001: MGELSSQEPL LLKKENEFDS LRKTPFLISS TKLILKVLMW VIFISWAAFI FLLPTKFTNE IFGTIVGATK GSIFRTAGST SLLFSFPIIM IAFLAIILLV
101: VSGEDQPQIK KAGKGPTFRL WTFPVLVDGP FGVVTAAEMI GVIIFSVYIV WAVVMYSIQN VDILSLYHLP DMKERSAKLL ELTGLRFGFI GLICLAFLFL
201: PVARGSVLLR AIDIPFEHAT RYHVWLGHLT MAIFSLHGLF YIIGWAIQGR LLEELVGWKN IGIANLPGVI SLLAGLLMWL TSLPGVRRKN FELFFYTHQL
301: YVVFVVFLAL HVGDFVFMMA GAGIFLFMLD RFLRFFQSRK TVDILSATCF PCGTVELVIS KPANLHYNAL GWIFLQIREL SWLQWHPFSV SSSPLDGKHH
401: LAILIKVLGD WTEKLKGNIL NLSVEESETE PLLLHNRKIT ASVEGPYGHE SPYHLTYENL ILVAGGIGIS PFLAILSDIL HRINDSSPCL PRNILIVWAI
501: KNSDELPLLE TVDMEAICPL FSDKLNLEIQ TYVTRESQPS LEEGKTPKAM HHSISPGFKG CRMSGLVGTG HVVWSGLYVI VSTIGFVITV ALLDIFYINP
601: FNITYWWYKG LLLIGCMTAS ILIFGGFVIA LWHLWERKTS SKEEPQDATK KADILQQNEA SLDSNFGEAR YVNNIRYGQR PDFQEIFGSH AKSWGSVDIG
701: VIVCGPPTLQ SSIAKECRSQ NLKRRGRQAI FHFNSHSFDL

Best Arabidopsis Sequence Match ( AT5G49730.1 )
(BLAST)

001: MDDYETPLLS KDSSSSSSVI TSSLKWILKV VMSMIFVTWV VFLMMMYPEQ LGDDFLTFVS SKTFLGTTGT MFLIFSCPIL VISVLASLYL IISGEDKVFT
101: KKKISKFPRF RLWTFPVLVD GPFGVVSAAE FLGIMVFSVF FLWSIYAYTL RNLDLLERFH VLPKNRSILL LEVTGLRLGM IGLLCMVFLF LPISRGSILL
201: RLIDIPFEHA TRYHVWLGHI TMAFFSLHGL CYVVGWIIQG QLLELIFSWN AIGIAILPGV ISLVAGLLMW VTSLHTVRKN YFELFFYTHQ LYIVFIVFLA
301: LHVGDYMFSI VAGGIFLFIL DRFLRFCQSR RTVDVISAKS LPCGTLELVL SKPPNMRYNA LSFIFLQVRE LSWLQWHPFS VSSSPLDGNH HVAVLIKVLG
401: GWTAKLRDQL SNLYEAENQD QLISPQSYPK ITTCVEGPYG HESPYHLAYE NLVLVAGGIG ITPFFAILSD ILHRKRDGKA CLPSKVLVVW AIKNSDELSL
501: LSAIDIPSIC PFFSKKLNLE IHIYITRQSE PRLEDGMVHK VVHPSVKLPR TNGCSMSVLV GTGDNIWSGL YLIISTIGFI SMITLLDIFY IKRYNITTWW
601: YKGLLFVGCM VASVLIFGGL VVVFWHRWEH KTGEVEANGN DKVDLNGEET HNPSAAELKG LAIEEDVQNY TTIRYGTRPA FREIFESLNG KWGSVDVGVI
701: VCGPATLQTT VAKEIRSHSI WRSANHPLFH FNSHSFDL

Arabidopsis Description

FRO6Ferric reduction oxidase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWS6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.