Factsheet for Solyc08g081690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008850.2.1
Solyc01g108280.2.1
Solyc11g062410.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64060.1	Solyc01g108280.2.1	AT4G33950.1	19716822
AT1G64060.1	Solyc01g008850.2.1	AT5G21326.1	23162070
AT1G64060.1	Solyc11g062410.1.1	AT5G21326.1	23162070

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032088	Potato	cytosol, nucleus, peroxisome	18.07	97.21
VIT_02s0025g00510.t01	Wine grape	cytosol	81.72	83.46
KRH41250	Soybean	cytosol	79.13	80.98
KRH59983	Soybean	cytosol, nucleus, plasma membrane	78.92	80.77
KRH27880	Soybean	cytosol	75.8	78.75
KRH77593	Soybean	cytosol	75.8	78.75
Bra027764.1-P	Field mustard	mitochondrion	77.26	78.48
CDY08347	Canola	mitochondrion	76.74	78.28
AT1G64060.1	Thale cress	cytosol	76.22	77.75
GSMUA_Achr9P05450_001	Banana	mitochondrion	68.54	75.78
CDY38202	Canola	mitochondrion	74.14	75.72
GSMUA_Achr6P31850_001	Banana	mitochondrion	69.16	74.66
HORVU3Hr1G069690.1	Barley	mitochondrion	9.35	74.38
EES01429	Sorghum	mitochondrion	70.51	71.93
Zm00001d043543_P002	Maize	mitochondrion	70.3	71.79
Zm00001d038762_P001	Maize	plastid	69.37	70.46
TraesCS3B01G314000.2	Wheat	mitochondrion	68.74	70.13
TraesCS3D01G279900.1	Wheat	mitochondrion	68.74	69.98
KXG22389	Sorghum	mitochondrion	69.37	69.8
TraesCS1A01G347700.1	Wheat	mitochondrion	68.22	68.37
TraesCS1D01G350600.1	Wheat	mitochondrion	68.43	68.08
TraesCS3A01G280200.1	Wheat	mitochondrion	68.95	68.03
TraesCS1B01G362200.1	Wheat	mitochondrion	68.43	67.8
Solyc05g025680.1.1	Tomato	plasma membrane	39.98	61.7
Solyc07g042460.1.1	Tomato	cytosol	52.23	57.09
Solyc06g068680.2.1	Tomato	cytosol	49.64	55.78
Solyc01g099620.2.1	Tomato	cytosol	50.05	55.72
Os01t0734200-00	Rice	mitochondrion, nucleus	18.07	54.89
Solyc06g075570.1.1	Tomato	cytosol	45.28	52.53
Solyc03g117980.2.1	Tomato	nucleus	51.09	52.45
Solyc11g072800.1.1	Tomato	cytosol	42.16	49.75
Solyc05g025690.1.1	Tomato	mitochondrion	8.72	34.71
Solyc03g112320.2.1	Tomato	plasma membrane	11.84	20.54
Solyc01g094900.1.1	Tomato	cytosol, mitochondrion, plasma membrane, plastid	3.63	17.95
Solyc06g036220.1.1	Tomato	plasma membrane	7.79	17.86
Solyc01g094890.2.1	Tomato	plasma membrane	13.19	17.81
Solyc01g102610.2.1	Tomato	plastid	13.6	17.7
Solyc01g094910.2.1	Tomato	peroxisome, plasma membrane, plastid	13.19	17.66

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	Gene3D:2.40.30.10	ncoils:Coil	InterPro:Cyt_b245_heavy_chain	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6
GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016491
GO:GO:0050664	GO:GO:0055114	GO:GO:0098869	InterPro:IPR002048	InterPro:IPR017927	UniProt:K4CPG5
InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030	PFAM:PF08414	PRINTS:PR00466
ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF66	InterPro:Riboflavin_synthase-like_b-brl
SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380	EnsemblPlantsGene:Solyc08g081690.2	EnsemblPlants:Solyc08g081690.2.1	TMHMM:TMhelix
UniParc:UPI000276C2B7	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr8:+:64671362..64680684

Molecular Weight (calculated)

109084.0 Da

IEP (calculated)

9.448

GRAVY (calculated)

-0.215

Length

963 amino acids

Sequence
(BLAST)

001: MRGLPGHERR WTSDTVSSGK DLSGESSPGT DSGNISGFAS EEFVEVILDL QDDDTIILRS VEPATVINID GSDPASGVGI GGASIETPAS VTSTSETRSP
101: MMRRSTSNKF RQFSQELKAE AVAKAKHFSQ ELKAELRRFS WSHGHASRAF SPASFFQNAV VGTGNGVDSA LAARALRRQR AQLDRTRSSA HKALRGLKFI
201: SNNKTNGWNE VENNFAKLAK DGYLYRSDFA QCIGMKDSKE FALELFDALS RRRRLKVDKI SKEELYEYWS QITDQSFDSR LQIFFDMVDK NEDGRIGEEE
301: VKEIIMLSAS ANKLSRLKEQ AEEYAALIME ELDPERLGYI ELWQLETLLL QKDTYLNYSQ ALSYTSQALS QNLQGLRKRS PIRRMSTKLV YSLQENWKRI
401: WVLVLWILIM IGLFLWKFYQ YKQKSAFQVM GYCLLTAKGA AETLKFNMAL ILLPVCRNTI TFLRSTKLSC FVPFDDNINF HKTVAAAIVT GIILHAGNHL
501: VCDFPKLIHA NSTNYQKYLV NDFGPSQPQY IDLVKGVEGV TGIVMVILMA IAFTLATRWF RRSLIKLPKP FDRLTGFNAF WYSHHLLIIV YIVLIIHGTF
601: LYLVHNWYSK TTWMYIAVPV LLYAGERTLR FFRSGLYSVR LLKVAIYPGN VLTLQMSKPP QFRYKSGQYM FVQCPAVSPF EWHPFSITSA PGDDYLSIHI
701: RQLGDWTQEL KRVFSEACEQ PEAGKSGLLR ADENTKTSLP KLLIDGPYGA PAQDYRKYDV LLLVGLGIGA TPFISILKDL LKNIVAMEEQ ADLVSDFSGN
801: SDMSAATSEQ PALNKISPKK RKSTLKTTNA YFYWVTREQG SFDWFKGVMN EVAELDQRGV IEMHNYLTSV YEEGDARSAL ITMVQALNHA KNGVDIVSGT
901: SVRTHFARPN WRKVFSKTLT KHANARIGVF YCGAPILAKE LSQLCKEFNQ KGTTKFEFHK EHF

Best Arabidopsis Sequence Match ( AT1G64060.1 )
(BLAST)

001: MKPFSKNDRR RWSFDSVSAG KTAVGSASTS PGTEYSINGD QEFVEVTIDL QDDDTIVLRS VEPATAINVI GDISDDNTGI MTPVSISRSP TMKRTSSNRF
101: RQFSQELKAE AVAKAKQLSQ ELKRFSWSRS FSGNLTTTST AANQSGGAGG GLVNSALEAR ALRKQRAQLD RTRSSAQRAL RGLRFISNKQ KNVDGWNDVQ
201: SNFEKFEKNG YIYRSDFAQC IGMKDSKEFA LELFDALSRR RRLKVEKINH DELYEYWSQI NDESFDSRLQ IFFDIVDKNE DGRITEEEVK EIIMLSASAN
301: KLSRLKEQAE EYAALIMEEL DPERLGYIEL WQLETLLLQK DTYLNYSQAL SYTSQALSQN LQGLRGKSRI HRMSSDFVYI MQENWKRIWV LSLWIMIMIG
401: LFLWKFFQYK QKDAFHVMGY CLLTAKGAAE TLKFNMALIL FPVCRNTITW LRSTRLSYFV PFDDNINFHK TIAGAIVVAV ILHIGDHLAC DFPRIVRATE
501: YDYNRYLFHY FQTKQPTYFD LVKGPEGITG ILMVILMIIS FTLATRWFRR NLVKLPKPFD RLTGFNAFWY SHHLFVIVYI LLILHGIFLY FAKPWYVRTT
601: WMYLAVPVLL YGGERTLRYF RSGSYSVRLL KVAIYPGNVL TLQMSKPTQF RYKSGQYMFV QCPAVSPFEW HPFSITSAPE DDYISIHIRQ LGDWTQELKR
701: VFSEVCEPPV GGKSGLLRAD ETTKKSLPKL LIDGPYGAPA QDYRKYDVLL LVGLGIGATP FISILKDLLN NIVKMEEHAD SISDFSRSSE YSTGSNGDTP
801: RRKRILKTTN AYFYWVTREQ GSFDWFKGVM NEVAELDQRG VIEMHNYLTS VYEEGDARSA LITMVQALNH AKNGVDIVSG TRVRTHFARP NWKKVLTKLS
901: SKHCNARIGV FYCGVPVLGK ELSKLCNTFN QKGSTKFEFH KEHF

Arabidopsis Description

RBOHFRespiratory burst oxidase homolog protein F [Source:UniProtKB/Swiss-Prot;Acc:O48538]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.