Factsheet for TraesCS3A01G280200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plasma membrane
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G187300.1
TraesCS4B01G131000.1
TraesCS4D01G126200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G64060.1	TraesCS4A01G187300.1	AT5G21326.1	23162070
AT1G64060.1	TraesCS4B01G131000.1	AT5G21326.1	23162070
AT1G64060.1	TraesCS4D01G126200.1	AT5G21326.1	23162070

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G279900.1	Wheat	mitochondrion	95.8	98.84
TraesCS3B01G314000.2	Wheat	mitochondrion	95.29	98.52
HORVU3Hr1G069780.1	Barley	mitochondrion	92.83	96.69
Os01t0734466-01	Rice	peroxisome, plasma membrane	50.2	91.42
EES01429	Sorghum	mitochondrion	84.73	87.61
Zm00001d043543_P002	Maize	mitochondrion	84.63	87.59
TraesCS1A01G347700.1	Wheat	mitochondrion	78.59	79.81
GSMUA_Achr9P05450_001	Banana	mitochondrion	68.75	77.04
GSMUA_Achr6P31850_001	Banana	mitochondrion	68.95	75.45
VIT_02s0025g00510.t01	Wine grape	cytosol	69.26	71.69
KRH41250	Soybean	cytosol	68.95	71.52
KRH59983	Soybean	cytosol, nucleus, plasma membrane	68.65	71.2
KRH27880	Soybean	cytosol	66.7	70.23
KRH77593	Soybean	cytosol	66.7	70.23
CDY08347	Canola	mitochondrion	67.01	69.28
Solyc08g081690.2.1	Tomato	cytosol	68.03	68.95
Bra027764.1-P	Field mustard	mitochondrion	66.8	68.78
PGSC0003DMT400032088	Potato	cytosol, nucleus, peroxisome	12.6	68.72
AT1G64060.1	Thale cress	cytosol	66.39	68.64
CDY38202	Canola	mitochondrion	63.83	66.07
TraesCS5A01G499900.1	Wheat	cytosol	51.02	54.19
TraesCS5A01G527600.1	Wheat	cytosol	46.82	53.96
TraesCS5A01G301700.1	Wheat	cytosol	50.61	53.7
TraesCS1A01G290700.2	Wheat	mitochondrion	43.95	53.62
TraesCS3A01G354200.2	Wheat	cytosol	45.7	52.41
TraesCS6A01G180600.1	Wheat	mitochondrion	51.13	52.2
TraesCS5A01G211800.1	Wheat	cytosol, mitochondrion, peroxisome, plasma membrane	52.87	52.17
TraesCS5A01G093600.1	Wheat	cytosol	46.41	51.65
TraesCS3A01G182900.1	Wheat	cytosol	47.64	51.61
TraesCS1A01G285700.1	Wheat	cytosol	45.18	47.22
TraesCS1A01G357100.1	Wheat	cytosol	28.59	42.86
TraesCS1A01G284600.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	34.12	42.05
TraesCS2A01G312600.1	Wheat	plasma membrane	13.83	18.05
TraesCS2A01G396000.1	Wheat	plasma membrane	14.04	17.65

Protein Annotations

MapMan:10.1.1	Gene3D:2.40.30.10	ncoils:Coil	InterPro:Cyt_b245_heavy_chain	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6	GO:GO:0003674
GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0016020	GO:GO:0016491	GO:GO:0050664	GO:GO:0055114	InterPro:IPR002048
InterPro:IPR017927	InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030	PFAM:PF08414
PRINTS:PR00466	ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF66
InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3A01G280200
EnsemblPlants:TraesCS3A01G280200.1	TIGR:cd00051	TIGR:cd06186	SEG:seg	:	:

Description

No Description!

Coordinates

chr3A:-:509419769..509428148

Molecular Weight (calculated)

109820.0 Da

IEP (calculated)

9.752

GRAVY (calculated)

-0.200

Length

976 amino acids

Sequence
(BLAST)

001: MRGGASAGHP RWGSAGTTPR SLSTGSSPRG SEPASEDGEE LVEVTLDLQD DDTIVLRSVE PAAAAALGSG SGALRLPVPA RGELGDGGAC GASSSSSRSP
101: SMRRTSSYRL LQLSQELMAG ARHFSHDLTR RFSRSHSHSR DEAHQQPSSG IESALAARAA RRQRAQLDRT RSGAHRALRG LRFISSNKAS NAWREVQANF
201: DRLARDGYLS RSDFAECIGT APHRPARLSI SLRSNPIQGI QTPARRAAAG MTESKEFAVE LFDTLSRRRQ MKLDTISKEE LREIWQQITD NSFDSRLQIF
301: FDMVDKNADG RIGEAEVKEI IMLSASANKL SRLKEQAEEY AALIMEELDP EELGYIELWQ LETLLLQKDT YVNYSQALSY TSQALSQNLA LRKKGSIRKI
401: GNSLIYYLED NWKRLWVLAL WIGIMAGLFT WKFIQYRERY VFKVMGYCVT TAKGAAETLK LNMAIILLPV CRNTITWLRN TRAARVLPFD DNINFHKTIA
501: AAIVVGVILH AGNHLVCDFP RLIRSSEEMY APLGIYFGET KPTYLALIKG VEGVTGIIMV VCMIIAFTLA TRWFRRSLVK LPKPFDKLTG FNAFWYSHHL
601: FAIVYVALIV HGQFLYLIRV WYRKSTWMYL AVPVCLYLGE RILRFFRSGS YAVRLLKVAI YPGNVLTLQM TKPATFRYKS GQYMFVQCPA VSPFEWHPFS
701: ITSAPGDEYL SIHVRQLGDW TRELKRVFSA ACEPPVSGKS GLLRADETTK KTLPKLLIDG PYGSPAQDYG KYDVLLLVGL GIGATPFISI LKDLLNNIIK
801: MEEEEDTSTD LYPPIGRNKP HVDLGTLMRV TSRPRKVLKT TNAYFYWVTR EQGSFDWFKG VMNEIADMDQ RNIIEMHNYL TSVYEEGDAR SALITMLQAL
901: NHAKNGVDVV SGTKVRTHFA RPNWKKVLAK IASKHPYAKI GVFYCGAPVL AQELAKLCHE FNGKCTTKFE FHKEYF

Best Arabidopsis Sequence Match ( AT1G19230.1 )
(BLAST)

001: MKLSPLSFST SSSFSHADGI DDGVELISSP FAGGAMLPVF LNDLSRNSGE SGSGSSWERE LVEVTLELDV GDDSILVCGM SEAASVDSRA RSVDLVTARL
101: SRNLSNASTR IRQKLGKLLR SESWKTTTSS TAGERDRDLE RQTAVTLGIL TARDKRKEDA KLQRSTSSAQ RALKGLQFIN KTTRGNSCVC DWDCDCDQMW
201: KKVEKRFESL SKNGLLARDD FGECVGMVDS KDFAVSVFDA LARRRRQKLE KITKDELHDF WLQISDQSFD ARLQIFFDMA DSNEDGKITR EEIKELLMLS
301: ASANKLAKLK EQAEEYASLI MEELDPENFG YIELWQLETL LLQRDAYMNY SRPLSTTSGG VNNWQRSWVL LVWVMLMAIL FVWKFLEYRE KAAFKVMGYC
401: LTTAKGAAET LKLNMALVLL PVCRNTLTWL RSTRARACVP FDDNINFHKI IACAIAIGIL VHAGTHLACD FPRIINSSPE QFVLIASAFN GTKPTFKDLM
501: TGAEGITGIS MVILTTIAFT LASTHFRRNR VRLPAPLDRL TGFNAFWYTH HLLVVVYIML IVHGTFLFFA DKWYQKTTWM YISVPLVLYV AERSLRACRS
601: KHYSVKILKV SMLPGEVLSL IMSKPPGFKY KSGQYIFLQC PTISRFEWHP FSITSAPGDD QLSVHIRTLG DWTEELRRVL TVGKDLSTCV IGRSKFSAYC
701: NIDMINRPKL LVDGPYGAPA QDYRSYDVLL LIGLGIGATP FISILKDLLN NSRDEQTDNE FSRSDFSWNS CTSSYTTATP TSTHGGKKKA VKAHFYWVTR
801: EPGSVEWFRG VMEEISDMDC RGQIELHNYL TSVYDEGDAR STLIKMVQAL NHAKHGVDIL SGTRVRTHFA RPNWKEVFSS IARKHPNSTV GVFYCGIQTV
901: AKELKKQAQD MSQKTTTRFE FHKEHF

Arabidopsis Description

RBOHERespiratory burst oxidase homolog protein E [Source:UniProtKB/Swiss-Prot;Acc:O81211]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.