Factsheet for TraesCS1D01G284800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G285700.1	Wheat	cytosol	87.59	93.68
TraesCS1B01G295100.1	Wheat	plasma membrane	63.36	92.68
HORVU1Hr1G072160.5	Barley	cytosol	78.68	84.06
TraesCS4D01G324800.1	Wheat	cytosol	64.26	69.93
TraesCS5D01G306400.1	Wheat	cytosol	61.26	66.74
GSMUA_Achr6P11760_001	Banana	golgi	26.23	64.22
Zm00001d052653_P003	Maize	cytosol, plastid	61.66	63.44
TraesCS1D01G285000.1	Wheat	cytosol	56.96	62.67
GSMUA_Achr6P11770_001	Banana	cytosol	24.72	61.44
Os11t0537400-01	Rice	plasma membrane	2.7	61.36
GSMUA_Achr2P21340_001	Banana	cytosol, peroxisome, plasma membrane	50.85	60.91
GSMUA_Achr6P16270_001	Banana	cytosol	52.35	60.74
GSMUA_Achr10P...	Banana	cytosol	54.85	59.63
Zm00001d007430_P002	Maize	cytosol	47.85	58.15
Zm00001d007421_P004	Maize	cytosol	54.85	57.81
OQU83587	Sorghum	plastid	61.76	57.18
VIT_01s0150g00440.t01	Wine grape	cytosol, peroxisome, plasma membrane, plastid	51.55	55.74
Bra020724.1-P	Field mustard	cytosol, nucleus, plasma membrane, plastid	50.75	55.05
Bra037520.1-P	Field mustard	cytosol	50.75	54.99
AT5G47910.1	Thale cress	cytosol, peroxisome, plasma membrane	50.05	54.29
VIT_19s0014g02830.t01	Wine grape	cytosol	45.65	54.29
TraesCS4D01G352200.3	Wheat	cytosol	45.95	54.19
TraesCS1D01G284900.1	Wheat	cytosol	62.76	54.05
Solyc06g068680.2.1	Tomato	cytosol	46.35	54.03
Solyc03g117980.2.1	Tomato	nucleus	50.55	53.84
KRH63901	Soybean	cytosol, nucleus, plasma membrane	49.95	53.77
PGSC0003DMT400036734	Potato	cytosol, nucleus, plasma membrane	50.45	53.73
AT5G51060.1	Thale cress	cytosol	48.65	53.7
Bra029194.1-P	Field mustard	cytosol	48.85	53.63
KRH41026	Soybean	mitochondrion	47.45	53.38
TraesCS5D01G105900.1	Wheat	cytosol	46.15	53.29
Zm00001d007426_P001	Maize	cytosol, plastid	52.95	53.17
VIT_01s0150g00450.t01	Wine grape	cytosol	49.05	53.09
KRH59706	Soybean	cytosol	47.25	52.56
KRH54051	Soybean	cytosol, nucleus, plasma membrane	49.45	52.5
AT5G07390.1	Thale cress	cytosol	47.15	52.22
TraesCS3D01G187300.2	Wheat	cytosol	46.85	52.0
Bra019191.1-P	Field mustard	cytosol, nucleus, plasma membrane	43.34	51.98
AT4G25090.1	Thale cress	cytosol	43.84	51.59
Bra009266.1-P	Field mustard	cytosol	45.85	50.78
Bra019189.1-P	Field mustard	cytosol, nucleus, plasma membrane	41.84	50.18
TraesCS1D01G289300.2	Wheat	mitochondrion	37.74	47.12
TraesCS3D01G279900.1	Wheat	mitochondrion	44.04	46.51
TraesCS3D01G347900.2	Wheat	cytosol	38.94	45.93
TraesCS1D01G350600.1	Wheat	mitochondrion	44.44	45.87
Bra011911.1-P	Field mustard	cytosol	28.33	43.94
TraesCS6D01G164500.1	Wheat	mitochondrion, plasma membrane	41.24	43.37
TraesCS5D01G222100.1	Wheat	mitochondrion	42.24	42.45
TraesCS1D01G283600.1	Wheat	cytosol, peroxisome, plasma membrane	29.33	36.17
Bra013862.1-P	Field mustard	cytosol	9.21	35.52
VIT_03s0063g00950.t01	Wine grape	extracellular, vacuole	7.31	34.27
CDY22645	Canola	cytosol	7.21	31.86
TraesCS2D01G393700.1	Wheat	plasma membrane	12.61	17.45
TraesCS2D01G311100.1	Wheat	plasma membrane	12.01	16.06

Protein Annotations

Gene3D:1.10.238.10	MapMan:10.1.1	Gene3D:2.40.30.10	Gene3D:3.40.50.80	InterPro:Cyt_b245_heavy_chain	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:FAD-bd_8	InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6
GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016491	GO:GO:0050664	GO:GO:0055114
InterPro:IPR002048	InterPro:IPR017927	InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030
PFAM:PF08414	PRINTS:PR00466	ScanProsite:PS00018	PFscan:PS50222	PFscan:PS51384	PANTHER:PTHR11972
PANTHER:PTHR11972:SF64	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF47473	SUPFAM:SSF52343	SUPFAM:SSF63380	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS1D01G284800	EnsemblPlants:TraesCS1D01G284800.1	TIGR:cd00051	TIGR:cd06186	SEG:seg	:

Description

No Description!

Coordinates

chr1D:+:382892913..382900480

Molecular Weight (calculated)

110819.0 Da

IEP (calculated)

9.353

GRAVY (calculated)

-0.259

Length

999 amino acids

Sequence
(BLAST)

001: MATSHSSPSL SSRASKNDQL SSFATACADT RPPAVSFGAA ALSSASALAA VSGGWVHTGE AGGQPDMPNR VGNDSGGGGG AGEPVEASGG VYETVLPPGK
101: SERFAEPVSA PHGGGGGSDS DEVEITLDVL DDSVVVRSVK PVAGGEDSAV TLEKRSSSHG RGVLRNASAR VKQVSQGLRR IASFNLRGGG PSRIDRSNSK
201: PVATHALEGL KFISGTNGSA EWTAADAERV FDRKAKNGRL SRSKFGECIG MKEATFAGEL FDALARRRNI TGDSIDKSEL REFWDQISDT SFDSRLQTFL
301: DMVDKNDDGR ISEDEVKQII TLSVSANKLT MVPRQCEEYA RLIMEALDPD ELGYIELYNL KMLLLEAPSE STTNSHKLSK LLSQRLRPTT DPSPVRRWYK
401: RAKCSLEDNW RRCWVMLLWL SICVGLFAWK FMQYRHHAVF GVMGYCVCVA KGGAETLKFN MALTLLPVCR NTITWLRSHT TAGRIVPFND NLKFHMAIAV
501: GITVGAGLHV ISHLACDFPR LLHAMDDEYE PMKPFFGDAK PPNYWWFVRG TEGWTGLVMM ALMAVAFTFA TAPLRKGKLR LPKLKKLESL DSNHEPRELT
601: RFARLVNASC SRLTWLVNAL LNRFTGYNVF WYTHHLLLAV YALLIVHGHF LYLNKKWQKK STWMYLAVPM TVYACERLTR TLRSRVRSVK KVRVAVHPHP
701: ATLLSLHLSK PQGFRYKSGQ YIYVKCPDVS PFQWHPFSIT SAPGDDYVSV HIKTLGNWTN QLRNAFLKVC PTPTEGTTEI LRAEYNRDNA VSNPSLPKVL
801: IDGPYGAPAQ DYKEYDIVLL VGLGIGATPM ISIIKDIITN ARRLDGDVES GNGNGGGASL FRTCRAYFYW VTREQGSLEW FRGVMDEVAE ADEKRIIELH
901: NHCTSVHQKG DARSALIAML QSLHYAKNGV DVVSGSRVMS HFGRPDWAQV YQRIADENKQ KRVGVFYCGE PVLTNELRGL AKYFSRKSST KFVFHSENF

Best Arabidopsis Sequence Match ( AT1G09090.2 )
(BLAST)

001: MREEEMESSS EGETNKISRC KATGSDNPDE DYVEITLEVR DETINTMKAK ATLRSVLSGR LKTMVKSLSF ASRRLDRSKS FGAMFALRGL RFIAKNDAVG
101: RGWDEVAMRF DKLAVEGKLP KSKFGHCIGM VESSEFVNEL FEALVRRRGT TSSSITKTEL FEFWEQITGN SFDDRLQIFF DMVDKNLDGR ITGDEVKEII
201: ALSASANKLS KIKENVDEYA ALIMEELDRD NLGYIELHNL ETLLLQVPSQ SNNSPSSANK RALNKMLSQK LIPTKDRNPV KRFAMNISYF FLENWKRIWV
301: LTLWISICIT LFTWKFLQYK RKTVFEVMGY CVTVAKGSAE TLKFNMALIL LPVCRNTITW LRTKSKLIGS VVPFDDNINF HKVVAFGIAV GIGLHAISHL
401: ACDFPRLLHA KNVEFEPMKK FFGDERPENY GWFMKGTDGW TGVTMVVLML VAYVLAQSWF RRNRANLPKS LKRLTGFNAF WYSHHLFVIV YVLLIVHGYF
501: VYLSKEWYHK TTWMYLAVPV LLYAFERLIR AFRPGAKAVK VLKVAVYPGN VLSLYMSKPK GFKYTSGQYI YINCSDVSPL QWHPFSITSA SGDDYLSVHI
601: RTLGDWTSQL KSLYSKVCQL PSTSQSGLFI ADIGQANNIT RFPRLLIDGP YGAPAQDYRN YDVLLLVGLG IGATPLISII RDVLNNIKNQ NSIERGTNQH
701: IKNYVATKRA YFYWVTREQG SLEWFSEVMN EVAEYDSEGM IELHNYCTSV YEEGDARSAL ITMLQSLHHA KSGIDIVSGT RVRTHFARPN WRSVFKHVAV
801: NHVNQRVGVF YCGNTCIIGE LKRLAQDFSR KTTTKFEFHK ENF

Arabidopsis Description

RBOHBRespiratory burst oxidase homolog protein B [Source:UniProtKB/Swiss-Prot;Acc:Q9SBI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.