CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033151.1-P	Field mustard	cytosol	78.14	97.98
CDY63433	Canola	cytosol	95.18	93.77
AT4G11230.1	Thale cress	cytosol	77.81	77.15
CDY22644	Canola	plasma membrane	34.51	55.9
CDY08347	Canola	mitochondrion	56.06	55.4
CDY38202	Canola	mitochondrion	54.02	53.45
CDY65632	Canola	nucleus, peroxisome	8.15	52.78
CDY06348	Canola	cytosol	42.23	48.28
CDY35764	Canola	cytosol, nucleus, plasma membrane	45.77	47.5
CDX92671	Canola	cytosol	38.48	47.49
CDX86335	Canola	cytosol, nucleus, plasma membrane	46.73	47.29
CDX85316	Canola	cytosol, nucleus, plasma membrane	46.62	47.18
CDY45918	Canola	cytosol, nucleus, plasma membrane, plastid	46.52	47.12
CDX86059	Canola	peroxisome, plasma membrane, plastid	19.4	46.29
CDY38845	Canola	cytosol, peroxisome, plasma membrane	44.69	45.82
CDY32647	Canola	cytosol, peroxisome, plasma membrane	44.69	45.82
CDX81049	Canola	cytosol	41.69	45.39
CDX70035	Canola	cytosol	42.77	45.03
CDY11053	Canola	cytosol, nucleus, plasma membrane	39.98	44.78
CDY21676	Canola	cytosol, peroxisome, plasma membrane, plastid	44.8	44.75
CDY26109	Canola	mitochondrion	28.08	44.41
CDX98976	Canola	cytosol	43.09	44.27
CDX78290	Canola	cytosol	40.51	44.26
CDX81047	Canola	cytosol	40.3	44.13
CDX81920	Canola	cytosol, nucleus, plasma membrane, plastid	44.16	44.11
CDY08237	Canola	cytosol, peroxisome, plasma membrane	25.08	43.98
CDX92674	Canola	mitochondrion	16.18	43.39
CDY41031	Canola	cytosol, peroxisome, plasma membrane	45.77	41.99
CDY11054	Canola	cytosol, nucleus, plasma membrane	36.55	41.79
CDY09233	Canola	cytosol	39.12	41.29
CDX92675	Canola	cytosol	16.93	40.93
CDY26689	Canola	cytosol, peroxisome, plasma membrane	44.37	40.71
CDX99140	Canola	cytosol, peroxisome, plasma membrane	32.58	36.02
CDY34341	Canola	nucleus	7.61	27.41
CDX86058	Canola	cytosol	9.97	26.88
CDY70539	Canola	nucleus	8.47	25.82
CDY22645	Canola	cytosol	5.68	23.45
CDY22585	Canola	plasma membrane	15.01	19.31
CDY12264	Canola	plasma membrane	14.47	19.12
CDY38013	Canola	golgi, plasma membrane	10.07	19.07
CDY07230	Canola	plasma membrane	14.47	19.01
CDX68510	Canola	extracellular, mitochondrion, plasma membrane, plastid	2.57	18.9
CDX90043	Canola	golgi, plasma membrane	11.68	18.76
CDY69826	Canola	cytosol, plastid, vacuole	7.07	18.49
CDY44266	Canola	plasma membrane, vacuole	13.83	18.48
CDX88061	Canola	plasma membrane	13.08	18.43
CDY46972	Canola	plasma membrane, vacuole	13.5	18.05
CDY38014	Canola	plasma membrane	12.97	17.16
CDY65711	Canola	plasma membrane	13.29	16.76
CDX71600	Canola	plasma membrane	13.29	16.73
CDY68445	Canola	plastid	7.72	13.64
CDY38012	Canola	plasma membrane	4.39	13.53

Protein Annotations

KEGG:00480+1.11.1.-	Gene3D:1.10.238.10	MapMan:10.1.1	Gene3D:2.40.30.10	GO:A0A078GL00	UniProt:A0A078GL00
EnsemblPlants:CDY25278	ProteinID:CDY25278	ProteinID:CDY25278.1	InterPro:Cyt_b245_heavy_chain	InterPro:EF-hand-dom_pair	InterPro:FAD-bd_8
InterPro:Fd_Rdtase_FAD-bd	InterPro:Fe3_Rdtase_TM_dom	InterPro:Fe_red_NAD-bd_6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601
GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0050664	GO:GO:0055114	GO:GO:0098869	EnsemblPlantsGene:GSBRNA2T00029338001	InterPro:IPR017927
InterPro:NADPH_Ox	PFAM:PF01794	PFAM:PF08022	PFAM:PF08030	PFAM:PF08414	PRINTS:PR00466
PFscan:PS51384	PANTHER:PTHR11972	PANTHER:PTHR11972:SF66	InterPro:Riboflavin_synthase-like_b-brl	SUPFAM:SSF47473	SUPFAM:SSF52343
SUPFAM:SSF63380	TMHMM:TMhelix	UniParc:UPI0004EDBF8A	SEG:seg	:	:

Description

BnaA02g21780DBnaA02g21780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GL00]

Coordinates

chrLK032172:-:439294..444511

Molecular Weight (calculated)

105558.0 Da

IEP (calculated)

8.448

GRAVY (calculated)

-0.093

Length

933 amino acids

Sequence
(BLAST)

001: MSMSFSHDDR WGSDLASAGE FTQSFPSLGA TYSPSCGEEL LEVTIEFPSG VLLNIDSVST TDPEITSCSA SGSGSSERLV VANAKQFSKD LKRKLQAGQG
101: ISQRDGGGYS CRSAPEPVVP HGGETPDALM LCRSVTKRLN RNGSCTQRAI HGLRFISSKE NEIAAWSEVR DKFANLSKDG YLCRSDFGRC IGLRLENENS
201: KEFAEELFDA LCRRRSIMVD KITLQELYEF WYQIADESFD SRLQIFFNMY KRAINDILFH VSLVTNASLE NIIILSASAN NLSRLRERAE EYAALIMEEL
301: SPDGLPSQYI ELKDLEMLLL HKDTPQSYSQ PFSQTSRALS QNLKDMRWGI SRSLLYSFQD NLKRIWVLTL WLMIMVVLFM WKCVQYKRKD AFHVMGYCLV
401: VAKGAAETLK FNMALILLPV CRITITYLRS TALSHSVPFD DSLNFHKTVS VAIIIGMLIH ASSHLACDFP RIVTATDVDY KRYLVHYFGV PRPTYFDLVK
501: GPVGITGFIM VIFMLIAYTL ASRRLRRNLT KLPKPFDKLT GFNAFWYSHH LLLAVYVLLI IHGVSLFLEQ TWYHKTIWMY LACPVLLYGG ERMLRFFRSR
601: LYSVEICKVV IYPGNVIVLH MSKPTSFEYK SGQYIFLQCP AVSKFEWHPF SITSSPGDDY LSIHIRQLGD WTEGIKKAFS VICQAPDAGK SGLLRADGPN
701: KTSLPELLID GPYGSPAQDH WKYDVLLLVG LGIGATPFIS ILRDLLNKIV KQHEKAEGLS GSCSNSNVSS DQSFSCLNSE PGNSISTNRT GMLNTKNAYF
801: YWVTREQGSF DWFRQIMSEI ADSDIKGVIE MHNYLTSVYD VGDARTTLLT MIQTLHHAKN GVDIQYFGFL SVRTHFGRPK WKKVLSKIST KHKNARIGVF
901: YCGGPSLGKE LSTLCHEFNQ TGCSRFEFRK EQF

Best Arabidopsis Sequence Match ( AT4G11230.1 )
(BLAST)

001: MSMSFSGGTH NDRWGSDLAS AGEFTQSFPS LPATYSPSPS SSSSSGEELL EVTIEFPSGV IINIDSVTGT GTDISGTDLE ITSCSDSGSG SRSLSLGWSA
101: SSERLTAGTN SKQQIQKISR RGYGYSSRSA PEPVVPHRGE ITDSVNLPRA LSQRPTRPNR DGSGTERAIH GLKFISSKEN GIVDWNDVQN NFAHLSKDGY
201: LFKSDFAHCI GLENENSKEF ADELFDALCR RRRIMVDKIN LQELYEFWYQ ITDESFDSRL QIFFNMVKNG DGRITENEVK EIIILSASAN NLSRLRERAE
301: EYAALIMEEL APDGLYSQYI ELKDLEILLL EKDISHSYSL PFSQTSRALS QNLKDRRWRM SRNLLYSLQD NWKRIWVLTL WFVIMAWLFM WKCYQYKHKD
401: AFHVMGYCLV MAKGAAETLK FNMALILLPV CRNTITYLRS TALSHSVPFD DCINFHKTIS VAIISAMLLH ATSHLACDFP RILASTDTDY KRYLVKYFGV
501: TRPTYFGLVN TPVGITGIIM VAFMLIAFTL ASRRCRRNLT KLPKPFDKLT GYNAFWYSHH LLLTVYVLLV IHGVSLYLEH KWYRKTVWMY LAVPVLLYVG
601: ERIFRFFRSR LYTVEICKVV IYPGNVVVLR MSKPTSFDYK SGQYVFVQCP SVSKFEWHPF SITSSPGDDY LSIHIRQRGD WTEGIKKAFS VVCHAPEAGK
701: SGLLRADVPN QRSFPELLID GPYGAPAQDH WKYDVVLLVG LGIGATPFVS ILRDLLNNII KQQEQAECIS GSCSNSNISS DHSFSCLNSE AASRIPQTQR
801: KTLNTKNAYF YWVTREQGSF DWFKEIMNEI ADSDRKGVIE MHNYLTSVYE EGDTRSNLLT MIQTLNHAKN GVDIFSGTKV RTHFGRPKWK KVLSKISTKH
901: RNARIGVFYC GVPSLGKELS TLCHEFNQTG ITRFDFHKEQ F

Arabidopsis Description

RBOHIProbable respiratory burst oxidase homolog protein I [Source:UniProtKB/Swiss-Prot;Acc:Q9SUT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.