Factsheet for Os06t0220000-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
plasma membrane 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

extracellular: 19038476
nucleus: 26035336
plastid: 27992503

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19038476 doi

XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G264500.1	Wheat	plastid	78.45	76.55
Solyc04g074420.1.1	Tomato	nucleus	22.97	73.03
TraesCS7A01G178500.1	Wheat	extracellular	81.63	71.52
TraesCS7D01G180600.1	Wheat	extracellular	80.92	71.34
TraesCS7B01G084300.1	Wheat	extracellular, golgi	81.27	71.21
Zm00001d044864_P001	Maize	mitochondrion	82.33	71.04
TraesCS7A01G178400.1	Wheat	extracellular	78.8	69.69
TraesCS7B01G084100.1	Wheat	extracellular	79.51	69.66
TraesCS7D01G180300.1	Wheat	extracellular	78.45	69.38
TraesCS7D01G180400.1	Wheat	extracellular	78.09	69.06
Os02t0756800-01	Rice	extracellular	75.62	65.24
EER89439	Sorghum	extracellular	78.8	63.17
Os02t0756600-01	Rice	extracellular	66.43	60.06
Os02t0756200-02	Rice	extracellular	63.25	58.12
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	53.36	58.08
Os02t0757100-01	Rice	extracellular	59.72	54.34
GSMUA_Achr7P12690_001	Banana	extracellular	39.93	54.33
Os06t0220200-00	Rice	endoplasmic reticulum, extracellular, vacuole	59.36	52.34
KRH16765	Soybean	nucleus	57.24	51.76
Os06t0220300-00	Rice	extracellular	57.24	51.27
PGSC0003DMT400079157	Potato	endoplasmic reticulum, vacuole	56.18	50.96
Solyc04g074410.1.1	Tomato	nucleus	56.18	50.96
Solyc04g074450.1.1	Tomato	extracellular	56.54	50.96
Os06t0219900-01	Rice	extracellular, plasma membrane, vacuole	56.54	50.96
KRH72378	Soybean	nucleus	56.18	50.8
PGSC0003DMT400079209	Potato	extracellular	56.18	50.8
KRH53040	Soybean	nucleus	55.12	50.65
KRH16766	Soybean	nucleus	56.18	50.64
PGSC0003DMT400079206	Potato	endoplasmic reticulum, extracellular	56.89	50.63
PGSC0003DMT400079158	Potato	endoplasmic reticulum, vacuole	55.48	50.48
PGSC0003DMT400079207	Potato	endoplasmic reticulum, vacuole	56.18	50.0
VIT_18s0001g06170.t01	Wine grape	endoplasmic reticulum, vacuole	56.18	50.0
AT1G35140.1	Thale cress	extracellular	54.42	49.84
KRH53041	Soybean	nucleus	56.89	49.69
PGSC0003DMT400079208	Potato	endoplasmic reticulum, vacuole	55.83	49.69
VIT_18s0001g06020.t01	Wine grape	endoplasmic reticulum, vacuole	55.83	49.69
VIT_18s0001g06150.t01	Wine grape	vacuole	55.83	49.53
AT4G08950.1	Thale cress	extracellular, vacuole	54.77	49.36
Solyc04g074440.1.1	Tomato	nucleus	54.77	49.21
CDX90701	Canola	endoplasmic reticulum, vacuole	54.06	49.2
CDY05033	Canola	endoplasmic reticulum, vacuole	54.06	48.73
Bra000660.1-P	Field mustard	endoplasmic reticulum, vacuole	54.06	48.73
PGSC0003DMT400079159	Potato	vacuole	55.12	48.45
Os10t0376400-00	Rice	extracellular, plasma membrane	52.65	44.61
KRH62323	Soybean	plastid	54.42	43.26
KRH62324	Soybean	nucleus	56.18	42.06
HORVU7Hr1G036780.8	Barley	golgi	44.17	35.51
Solyc04g074430.1.1	Tomato	nucleus	15.9	34.09
Os07t0496700-01	Rice	extracellular	39.22	33.95
Os06t0133600-01	Rice	golgi, vacuole	37.1	30.17

Protein Annotations

EnsemblPlants:Os06t0220000-01	EnsemblPlantsGene:Os06g0220000	InterPro:EXORDIUM-like	PANTHER:PTHR31279	PANTHER:PTHR31279:SF34	PFAM:PF04674
ProteinID:BAF19081.1	ProteinID:BAS96822.1	SEG:seg	UniParc:UPI0000E1270A	UniProt:Q0DDJ2	MapMan:35.1

Description

Similar to Phi-1 protein. (Os06t0220000-01)

Coordinates

chr6:-:6180335..6181296

Molecular Weight (calculated)

28594.1 Da

IEP (calculated)

8.833

GRAVY (calculated)

0.124

Length

283 amino acids

Sequence
(BLAST)

001: HNGAVLSGDI PVSILWYGRF TPAQKAVVTD FVLSLAAPLQ AAPAPSVSQW WGSIHRLYLS KAVAVGKNGG AHGGGGGGRA KNARVVLSGQ VSDEGCSLGK
101: SLKLSQLPTL AARARPGKGG VALVLTAQDV AVEGFCMSRC GTHGPVSRAG AAYAWVGNSA TQCPGQCAWP FHQPVYGPQA APLVPPSGDV GMDGMVINVA
201: SMVAGAVTNP FGDGFYQGER GAALEAATAC TGVYGKGAYP GYAGALLVDK ATGASYNAHG AHGRKYLLPA LFDPDTSACS TLV

Best Arabidopsis Sequence Match ( AT1G35140.1 )
(BLAST)

001: MASFVMGYFL LFAVAFMCLD ARTDKTQDYT SFQYHKGALL TGDVSINLIW YGKFKPSQRA IVTDFVASLS SSRRSTMAQN PSVATWWKTV EKYYQFRKMT
101: TTRGLSLSLG EQILDQGYSM GKSLTEKNLK DLAAKGGQSY AVNVVLTSAD VTVQGFCMNR CGSHGTGSGS GKKGSRFAYI WVGNSETQCP GQCAWPFHAP
201: VYGPQSPPLV APNNDVGLDG MVINLASLMA ATATNPFGDG YYQGPKTAPL EAGSACTGVY GKGSYPGYAG ELLVDATTGG SYNVKGLNGR KYLLPALFDP
301: KTDSCSTLF

Arabidopsis Description

EXL1Protein EXORDIUM-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6E4]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.