Factsheet for PGSC0003DMT400079209

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g074450.1.1	Tomato	extracellular	97.44	97.13
PGSC0003DMT400079158	Potato	endoplasmic reticulum, vacuole	94.25	94.86
PGSC0003DMT400079157	Potato	endoplasmic reticulum, vacuole	93.29	93.59
PGSC0003DMT400079207	Potato	endoplasmic reticulum, vacuole	93.93	92.45
PGSC0003DMT400079206	Potato	endoplasmic reticulum, extracellular	93.93	92.45
PGSC0003DMT400079208	Potato	endoplasmic reticulum, vacuole	93.61	92.14
VIT_18s0001g06150.t01	Wine grape	vacuole	77.32	75.86
KRH16765	Soybean	nucleus	72.52	72.52
KRH53041	Soybean	nucleus	72.84	70.37
AT4G08950.1	Thale cress	extracellular, vacuole	69.65	69.43
CDX90701	Canola	endoplasmic reticulum, vacuole	68.05	68.49
Bra000660.1-P	Field mustard	endoplasmic reticulum, vacuole	68.69	68.47
CDY05033	Canola	endoplasmic reticulum, vacuole	68.05	67.83
GSMUA_Achr10P...	Banana	cytosol, extracellular, plastid	46.33	66.82
PGSC0003DMT400079159	Potato	vacuole	67.73	65.84
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular	47.28	64.07
KRH62324	Soybean	nucleus	72.84	60.32
PGSC0003DMT400032756	Potato	extracellular	57.83	60.13
GSMUA_Achr7P12680_001	Banana	endoplasmic reticulum, extracellular	49.2	59.92
Os02t0757100-01	Rice	extracellular	59.42	59.81
GSMUA_Achr7P12690_001	Banana	extracellular	39.62	59.62
EES07217	Sorghum	endoplasmic reticulum, extracellular	57.51	57.88
TraesCS6A01G316600.1	Wheat	endoplasmic reticulum, extracellular	57.19	57.56
HORVU6Hr1G077750.1	Barley	endoplasmic reticulum, extracellular	57.83	57.46
TraesCS6B01G347100.1	Wheat	endoplasmic reticulum, extracellular	56.23	56.96
TraesCS6D01G296100.1	Wheat	endoplasmic reticulum, extracellular	56.23	56.59
Zm00001d018107_P001	Maize	endoplasmic reticulum, extracellular	56.55	56.37
Zm00001d052205_P001	Maize	extracellular	56.55	56.19
Os06t0220000-01	Rice	extracellular	50.8	56.18
Os02t0756200-02	Rice	extracellular	54.95	55.84
PGSC0003DMT400079160	Potato	extracellular, golgi	54.95	55.66
TraesCSU01G264500.1	Wheat	plastid	51.44	55.52
HORVU6Hr1G077790.1	Barley	endoplasmic reticulum, extracellular	54.31	54.84
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	45.37	54.62
PGSC0003DMT400079205	Potato	endoplasmic reticulum, vacuole	53.67	54.37
TraesCS6D01G296400.1	Wheat	endoplasmic reticulum, extracellular, vacuole	53.99	54.34
TraesCS6B01G347400.1	Wheat	endoplasmic reticulum, extracellular, vacuole	53.35	53.87
TraesCS6A01G316900.1	Wheat	endoplasmic reticulum, extracellular, vacuole	53.35	53.87
TraesCS7D01G180600.1	Wheat	extracellular	54.63	53.27
Os02t0756600-01	Rice	extracellular	52.72	52.72
HORVU6Hr1G077780.1	Barley	endoplasmic reticulum, extracellular	52.72	52.38
TraesCS7B01G084300.1	Wheat	extracellular, golgi	53.99	52.32
EES05498	Sorghum	endoplasmic reticulum, vacuole	51.76	52.26
TraesCS6B01G347200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	53.04	52.2
TraesCS7A01G178500.1	Wheat	extracellular	53.67	52.01
TraesCS7A01G178400.1	Wheat	extracellular	53.04	51.88
TraesCS7D01G180300.1	Wheat	extracellular	53.04	51.88
TraesCS6D01G296300.1	Wheat	extracellular, plasma membrane	52.08	51.75
TraesCS6A01G316800.1	Wheat	endoplasmic reticulum, extracellular, vacuole	52.08	51.75
TraesCS6A01G316700.1	Wheat	endoplasmic reticulum	53.04	51.71
TraesCS7B01G084100.1	Wheat	extracellular	53.35	51.7
TraesCS7D01G180400.1	Wheat	extracellular	52.72	51.56
EES05496	Sorghum	golgi, vacuole	54.31	51.52
TraesCS6B01G347300.1	Wheat	endoplasmic reticulum, extracellular	51.44	51.11
TraesCS6D01G296200.1	Wheat	endoplasmic reticulum	52.72	51.08
EER88094	Sorghum	endoplasmic reticulum, vacuole	54.63	50.59
Zm00001d052206_P001	Maize	plastid	52.4	50.46
Zm00001d044864_P001	Maize	mitochondrion	52.72	50.3
Os06t0220200-00	Rice	endoplasmic reticulum, extracellular, vacuole	51.44	50.16
Os02t0756800-01	Rice	extracellular	51.76	49.39
TraesCS7D01G180500.1	Wheat	extracellular	48.88	48.88
Zm00001d037205_P001	Maize	extracellular	52.4	48.81
Zm00001d018105_P001	Maize	extracellular	48.88	48.57
KXG30713	Sorghum	golgi, vacuole	48.56	47.5
Os06t0220300-00	Rice	extracellular	46.96	46.52
EER89439	Sorghum	extracellular	52.08	46.18
GSMUA_Achr7P12670_001	Banana	endoplasmic reticulum, extracellular	16.29	45.54
HORVU6Hr1G077770.1	Barley	mitochondrion, plastid	52.72	39.76
PGSC0003DMT400038389	Potato	cytosol	11.18	34.65
PGSC0003DMT400093900	Potato	mitochondrion	36.42	33.73
PGSC0003DMT400059235	Potato	endoplasmic reticulum, plasma membrane	36.1	32.38
PGSC0003DMT400043340	Potato	extracellular	36.1	32.1
GSMUA_Achr6P30430_001	Banana	endoplasmic reticulum	26.2	31.42
PGSC0003DMT400072047	Potato	extracellular, vacuole	34.19	30.84
PGSC0003DMT400072046	Potato	extracellular, vacuole	34.19	30.84
Zm00001d018106_P001	Maize	plastid	48.56	25.5
PGSC0003DMT400089791	Potato	cytosol	10.86	24.82
HORVU7Hr1G036780.8	Barley	golgi	27.8	24.72
HORVU6Hr1G077820.1	Barley	endoplasmic reticulum	14.06	22.34
PGSC0003DMT400095305	Potato	cytosol	7.99	20.33

Protein Annotations

EnsemblPlants:PGSC0003DMT400079209	EnsemblPlantsGene:PGSC0003DMG400030829	EntrezGene:102580699	InterPro:EXORDIUM-like	PANTHER:PTHR31279	PANTHER:PTHR31279:SF3
PFAM:PF04674	PGSC:PGSC0003DMG400030829	RefSeq:XP_006363276.1	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000295B854
UniProt:M1D1F1	MapMan:35.1	:	:	:	:

Description

Phi-1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030829]

Coordinates

chr4:-:63963873..63965009

Molecular Weight (calculated)

33543.9 Da

IEP (calculated)

8.868

GRAVY (calculated)

-0.058

Length

313 amino acids

Sequence
(BLAST)

001: MSSSHFILSL FVLISFINVA FASRKLSALV QDPQMQLLEY HKGALLSGKI SVNLIWYGKF KPSQRAIVSD FITSLSSSTP SKTNPSVAQW WKTTEKYYHL
101: ANSKNTLTLS LGKQVLIENY SLGKSLTQKQ IVQLASKGEQ RDAINVVLTA SDVAVDGFCV NRCGTHGSSK GAVIKGKTYK FAYIWVGNSE TLCPGYCAWP
201: FHQPIYGPQS PPLGAPNNDV GVDGMVINLA SLLAGTATNP FGNGYYQGEE DAPLEAASAC PGVYAKGAYP GYAGDLLVDK TTGASYNAHG TNGRKYLVPA
301: LYDPATSSCS TLV

Best Arabidopsis Sequence Match ( AT4G08950.1 )
(BLAST)

001: MYLLVFKLFL FLSLLQISVS ARNLASQEPN QFQLLKYHKG ALLSGKISVN LIWYGKFKPS QRAIISDFIT SLTHTSPTSK TLHQPSVATW WKTTEKYYKL
101: ATPSKNSSPL SLTLGKQIID ESCSLGKSLT DKKIQTLASK GDQRNAINVV LTSADVTVTG FGMSRCGTHG HARGLGKRGS KFAYIWVGNS ETQCPGQCAW
201: PFHAPVYGPQ SPPLVAPNND VGLDGMVINL ASLLAGTATN PFGNGYYQGP QNAPLEAASA CPGVYGKGAY PGYAGDLLVD TTTGGSFNAY GANGRKFLLP
301: ALYDPTTSAC STMV

Arabidopsis Description

EXOProtein EXORDIUM [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPE7]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.