Factsheet for Os07t0640100-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998
plastid: 21433289
mitochondrion: 23027867

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001445.1-P	Field mustard	cytosol	2.29	1.0
Os07t0640000-01	Rice	cytosol	2.29	0.74
CDY00764	Canola	cytosol	2.29	0.52
CDY42140	Canola	cytosol	2.29	0.51
Bra034765.1-P	Field mustard	cytosol	2.29	0.51
CDX73828	Canola	cytosol	2.29	0.5
CDY08441	Canola	cytosol	2.29	0.5
AT3G12270.1	Thale cress	cytosol	2.29	0.5
TraesCS2B01G172600.1	Wheat	cytosol	2.29	0.5
TraesCS2A01G147100.1	Wheat	cytosol	2.29	0.5
TraesCS2D01G151900.1	Wheat	cytosol	2.29	0.5
Zm00001d019697_P001	Maize	cytosol	2.29	0.49
EER96428	Sorghum	cytosol	2.29	0.49
HORVU2Hr1G026200.11	Barley	cytosol	2.29	0.49
VIT_13s0084g00650.t01	Wine grape	cytosol	2.29	0.48
KRH30091	Soybean	nucleus	1.53	0.32
KRH62812	Soybean	cytosol	1.53	0.32
GSMUA_Achr3P09300_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	1.53	0.31
Os09t0359800-01	Rice	cytosol	0.76	0.26
Os04t0677066-00	Rice	nucleus	0.76	0.25
PGSC0003DMT400008488	Potato	nucleus	0.76	0.16
Solyc01g096550.2.1	Tomato	cytosol	0.76	0.16
Os06t0142800-01	Rice	cytosol	0.0	0.0
Os07t0671700-01	Rice	plasma membrane	0.0	0.0
Os10t0489100-01	Rice	cytosol, nucleus	0.0	0.0
Zm00001d014027_P001	Maize	cytosol	0.0	0.0
CDY49141	Canola	nucleus	0.0	0.0

Protein Annotations

EMBL:AK059275	EMBL:AK070897	EnsemblPlants:Os07t0640100-01	EnsemblPlantsGene:Os07g0640100	EntrezGene:4344058	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	PANTHER:PTHR12964	ProteinID:BAC16465.1
ProteinID:BAD31263.1	ProteinID:BAF22334.1	ProteinID:BAT02851.1	ProteinID:EAZ40829.1	RefSeq:XP_015644779.1	UniParc:UPI00000AE4DE
UniProt:Q8GS72	MapMan:2.4.1.4.1.3	:	:	:	:

Description

Complex 1 LYR protein family protein. (Os07t0640100-01)

Coordinates

chr7:+:26637549..26639817

Molecular Weight (calculated)

14965.1 Da

IEP (calculated)

9.472

GRAVY (calculated)

-0.429

Length

131 amino acids

Sequence
(BLAST)

001: MAFTMRAVKV PPNSASLEEA RHRVFDFFRQ ACRAIPSIME IYNLDDVVTP SQLRSTIAKE IRKNQGVTNP KVIDMLLFKG MEELGNITEH AKQRHHVIGQ
101: YVVGQKGLVQ DMEKDQGSSD FLKKFYTSNY S

Best Arabidopsis Sequence Match ( AT3G12260.1 )
(BLAST)

001: MAAPFALRKI GVPPNSANLT EARRRVFDFF RAACRSIPTI MDIYNLQDVV APSQLRYAIS AQIRNNAHIT DPKVIDLLIF KGMEELTDIV DHAKQRHHII
101: GQYVVGEGLV QNTGNKDQGK TDFLKNFYTS NYF

Arabidopsis Description

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHI0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.