Factsheet for Os12t0179800-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

mitochondrion: 19505461

gfp PMID: 19505461 doi

PJ Chung, YS Kim, SH Park, BH Nahm, JK Kim

School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Republic of Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G124700.1	Wheat	plastid	87.28	86.62
TraesCSU01G136000.1	Wheat	plastid	86.01	85.35
Zm00001d023585_P001	Maize	plastid	74.81	83.76
KXG23116	Sorghum	plastid	82.95	83.38
TraesCS5A01G114700.3	Wheat	cytosol	84.99	80.68
HORVU5Hr1G037540.3	Barley	plastid	83.97	73.83
PGSC0003DMT400082473	Potato	cytosol, mitochondrion	55.22	61.65
CDY44790	Canola	mitochondrion	55.98	61.62
CDY40730	Canola	mitochondrion	55.73	61.34
Bra028643.1-P	Field mustard	mitochondrion	55.47	61.06
KRH75061	Soybean	nucleus	18.32	58.54
AT5G09230.7	Thale cress	mitochondrion	55.47	57.98
Solyc04g009430.2.1	Tomato	mitochondrion	56.49	57.66
KRH53938	Soybean	plastid	57.25	57.4
KRH64001	Soybean	plastid	56.74	56.74
GSMUA_Achr6P25880_001	Banana	cytosol, plastid	61.83	52.83
VIT_07s0031g02510.t01	Wine grape	mitochondrion	56.49	52.73
Zm00001d019276_P002	Maize	mitochondrion	25.7	52.33
Zm00001d047121_P003	Maize	plastid	25.7	26.72
Zm00001d046205_P001	Maize	cytosol	29.52	25.05
Os04t0271000-01	Rice	cytosol	18.83	15.32

Protein Annotations

MapMan:12.3.2.3	MapMan:18.2.7	Gene3D:3.30.1600.10	Gene3D:3.40.50.1220	EntrezGene:4351669	ProteinID:ABA95936.1
ProteinID:BAF29329.1	ProteinID:BAT16137.1	InterPro:DHS-like_NAD/FAD-binding_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005739	GO:GO:0005759	GO:GO:0006464	GO:GO:0006471	GO:GO:0006476	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0031348	GO:GO:0034979	GO:GO:0042742
GO:GO:0046872	GO:GO:0070403	InterPro:IPR026590	InterPro:IPR026591	HAMAP:MF_01967	EnsemblPlantsGene:Os12g0179800
EnsemblPlants:Os12t0179800-01	PFAM:PF02146	PFscan:PS50305	PANTHER:PTHR43688	UniProt:Q2QWW9	SUPFAM:SSF52467
InterPro:Sirtuin	InterPro:Sirtuin_cat_small_dom_sf	InterPro:Sirtuin_class_II	InterPro:Ssirtuin_cat_dom	UniParc:UPI0000681935	RefSeq:XP_015618411.1
SEG:seg	:	:	:	:	:

Description

Sir2, OsSIR2b, OsSir2b, OsSRT2, SRT2NAD-dependent histone deacetylase, silent information regulator Sir2 domain containing protein. (Os12t0179800-01)

Coordinates

chr12:-:4032214..4036962

Molecular Weight (calculated)

43467.8 Da

IEP (calculated)

8.620

GRAVY (calculated)

-0.317

Length

393 amino acids

Sequence
(BLAST)

001: MAAGAHASRA SAPIIAGLTG ALRAAYKGFS PQLCNFHASV NNGLLHRRKI QLHFICSFRS IQARYNHSSA VAPKDYCETY IQFLRDKQIV PDSDPPSAKD
101: VDLLYRFIDQ SKKLMVLTGA GMSTESGIPD YRSPNGAYSS GFKPLTHQEF VRSIRARRRY WARSYAGWRR FRRAQPNSAH YALASLERIG RVHSMVTQNV
201: DRLHHRAGSK PVELHGSVYE VACLDCGTSI DRESFQEQVK DLNPKWALAI DSLEVGQPGS DKSFGMQQRP DGDIEIDEKF WEQDFDIPSC NQCGGVLKPD
301: VVMFGDNVPE ERAESTKEAA RNCDALLVVG SALMTMSAFR LARLAHEANA PIAAITIGET RADSILSLKI NARCGEILPR ILQMGSLAVP NVS

Best Arabidopsis Sequence Match ( AT5G09230.2 )
(BLAST)

001: MNMRRVFGGV STDLFPSRSM YRPLQSGGNL VMLFKGCRRF VRTTCRVSIP GGSLGNESKA PPRFLRDRKI VPDADPPNME DIHKLYRLFE QSSRLTILTG
101: AGVSTECGIP DYRSPNGAYS SGFKPITHQE FTRSSRARRR YWARSYAGWR RFTAAQPGPA HTALASLEKA GRINFMITQN VDRLHHRAGS DPLELHGTVY
201: TVMCLECGFS FPRDLFQDQL KAINPKWAEA IESIDHGDPG SEKSFGMKQR PDGDIEIDEK FWEEGFHIPV CEKCKGVLKP DVIFFGDNIP KERATQAMEV
301: AKQSDAFLVL GSSLMTMSAF RLCRAAHEAG AMTAIVNIGE TRADDIVPLK INARVGEILH RVLDVGSLSV PAL

Arabidopsis Description

SRT2sirtuin 2 [Source:TAIR;Acc:AT5G09230]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.