Factsheet for TraesCS5A01G114700.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G124700.1	Wheat	plastid	90.58	94.7
TraesCSU01G136000.1	Wheat	plastid	89.86	93.94
Os12t0179800-01	Rice	mitochondrion	80.68	84.99
KXG23116	Sorghum	plastid	76.57	81.07
HORVU5Hr1G037540.3	Barley	plastid	86.96	80.54
Zm00001d023585_P001	Maize	plastid	67.87	80.06
PGSC0003DMT400082473	Potato	cytosol, mitochondrion	52.42	61.65
CDY44790	Canola	mitochondrion	52.66	61.06
CDY40730	Canola	mitochondrion	52.42	60.78
Bra028643.1-P	Field mustard	mitochondrion	52.17	60.5
KRH75061	Soybean	nucleus	17.63	59.35
AT5G09230.7	Thale cress	mitochondrion	52.42	57.71
Solyc04g009430.2.1	Tomato	mitochondrion	53.38	57.4
KRH53938	Soybean	plastid	54.35	57.4
KRH64001	Soybean	plastid	54.35	57.25
Zm00001d019276_P002	Maize	mitochondrion	25.12	53.89
GSMUA_Achr6P25880_001	Banana	cytosol, plastid	59.18	53.26
VIT_07s0031g02510.t01	Wine grape	mitochondrion	53.38	52.49
Zm00001d047121_P003	Maize	plastid	24.4	26.72
Zm00001d046205_P001	Maize	cytosol	28.02	25.05
TraesCS2A01G077800.1	Wheat	cytosol	17.63	16.59

Protein Annotations

MapMan:12.3.2.3	MapMan:18.2.7	Gene3D:3.30.1600.10	Gene3D:3.40.50.1220	InterPro:DHS-like_NAD/FAD-binding_dom	InterPro:Fibrillarin
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987
GO:GO:0016740	GO:GO:0070403	InterPro:IPR026590	InterPro:IPR026591	HAMAP:MF_01967	PFAM:PF01269
PFAM:PF02146	PFscan:PS50305	PANTHER:PTHR43688	SUPFAM:SSF52467	InterPro:Sirtuin	InterPro:Sirtuin_cat_small_dom_sf
InterPro:Sirtuin_class_II	InterPro:Ssirtuin_cat_dom	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5A01G114700	EnsemblPlants:TraesCS5A01G114700.3	TIGR:cd01409
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:229763694..229772647

Molecular Weight (calculated)

46173.3 Da

IEP (calculated)

9.231

GRAVY (calculated)

-0.280

Length

414 amino acids

Sequence
(BLAST)

001: MNEDGSKVEY WVWNPFRSKL AAVVLCGVDN IWIIIAGFGS ALRGIPKGFC PRFYNIQASI CNGLVHRRKI PLPLRWSFRS IQARNNHSPS AVAPKDYCET
101: YIQFLRDKRI VPDSDPPSSK DVDLLYRFID KSNKLMVLTG AGMSTESGIP DYRSPNGAYS SGFKPLTHQE FVRSIRARRR YWARSYAGWR RFRRAQPNTA
201: HYALASLERI GRVHTMVTQN VDRLHHRAGS KPIELHGSVY EVICLDCGTS ISRESFQEQV KDLNPKWALA IDSLEEGQPG SSRSFGMQQR PDGDIEIDEK
301: FWEQDFDIPG CSQCGGVLKP DVVMFGDNVP IERADSAKEA ARNCDALLVV GSAVMTMSAF RLARLAHEAN APIAAINIGG TRADSIISLK INARCGEILP
401: RVLRMGSLAV PSIS

Best Arabidopsis Sequence Match ( AT5G09230.2 )
(BLAST)

001: MNMRRVFGGV STDLFPSRSM YRPLQSGGNL VMLFKGCRRF VRTTCRVSIP GGSLGNESKA PPRFLRDRKI VPDADPPNME DIHKLYRLFE QSSRLTILTG
101: AGVSTECGIP DYRSPNGAYS SGFKPITHQE FTRSSRARRR YWARSYAGWR RFTAAQPGPA HTALASLEKA GRINFMITQN VDRLHHRAGS DPLELHGTVY
201: TVMCLECGFS FPRDLFQDQL KAINPKWAEA IESIDHGDPG SEKSFGMKQR PDGDIEIDEK FWEEGFHIPV CEKCKGVLKP DVIFFGDNIP KERATQAMEV
301: AKQSDAFLVL GSSLMTMSAF RLCRAAHEAG AMTAIVNIGE TRADDIVPLK INARVGEILH RVLDVGSLSV PAL

Arabidopsis Description

SRT2sirtuin 2 [Source:TAIR;Acc:AT5G09230]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.