Factsheet for PGSC0003DMT400082473

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g009430.2.1	Tomato	mitochondrion	95.45	87.27
Bra028643.1-P	Field mustard	mitochondrion	69.89	68.91
CDY40730	Canola	mitochondrion	69.32	68.35
CDY44790	Canola	mitochondrion	69.32	68.35
AT5G09230.7	Thale cress	mitochondrion	71.02	66.49
KRH75061	Soybean	nucleus	22.73	65.04
KRH64001	Soybean	plastid	71.59	64.12
KRH53938	Soybean	plastid	69.32	62.24
VIT_07s0031g02510.t01	Wine grape	mitochondrion	70.45	58.91
Os12t0179800-01	Rice	mitochondrion	61.65	55.22
TraesCS5D01G124700.1	Wheat	plastid	61.65	54.8
KXG23116	Sorghum	plastid	60.8	54.73
TraesCSU01G136000.1	Wheat	plastid	61.08	54.29
Zm00001d023585_P001	Maize	plastid	53.41	53.56
TraesCS5A01G114700.3	Wheat	cytosol	61.65	52.42
HORVU5Hr1G037540.3	Barley	plastid	62.22	48.99
GSMUA_Achr6P25880_001	Banana	cytosol, plastid	63.92	48.91
Zm00001d019276_P002	Maize	mitochondrion	19.03	34.72
PGSC0003DMT400057382	Potato	cytosol	21.02	17.13
Zm00001d046205_P001	Maize	cytosol	22.16	16.85
Zm00001d047121_P003	Maize	plastid	17.61	16.4

Protein Annotations

MapMan:12.3.2.3	MapMan:18.2.7	Gene3D:3.30.1600.10	Gene3D:3.40.50.1220	InterPro:DHS-like_NAD/FAD-binding_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006464	GO:GO:0006471
GO:GO:0006476	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058
GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0031348
GO:GO:0034979	GO:GO:0042742	GO:GO:0046872	GO:GO:0070403	InterPro:IPR026590	InterPro:IPR026591
UniProt:M1D608	HAMAP:MF_01967	PFAM:PF02146	EnsemblPlantsGene:PGSC0003DMG400032556	PGSC:PGSC0003DMG400032556	EnsemblPlants:PGSC0003DMT400082473
PFscan:PS50305	PANTHER:PTHR43688	SUPFAM:SSF52467	InterPro:Sirtuin	InterPro:Sirtuin_cat_small_dom_sf	InterPro:Sirtuin_class_II
InterPro:Ssirtuin_cat_dom	UniParc:UPI00029561C3	SEG:seg	:	:	:

Description

Histone deacetylase [Source:PGSC_GENE;Acc:PGSC0003DMG400032556]

Coordinates

chr4:+:5032295..5040487

Molecular Weight (calculated)

38922.4 Da

IEP (calculated)

8.555

GRAVY (calculated)

-0.272

Length

352 amino acids

Sequence
(BLAST)

001: MGKWFSGVKK FIPFEGYAKS VKTAARISFP KISSDCTDKE PSNFLSHKKM VPYSDPPSME DVESLYEFFD RSTKLVVLTG AGMSTESGIP DYRSPNGAYS
101: TGFKPITHQE FLRSIKARRR YWARSYAGWR RFTAAQPSTG HIALSSLEKA GHISFLITQN VDRLHHRAGS NPLELHGTVY IVACTNCGFS LPRDLFQDQV
201: KAHNPKWAEA IESLDYDSRS DKSFGMKQRP DGDIEIDEKF WEENFYIPEC QSCQGVLKPD VVFFGDNVPK SRADAAMEAA KGCDAFLVLG SSLMTMSAFR
301: LIKAAREAGA ATAIINIGAT RADDIVPLKI SARVGEILPR LLSIGSLSIP AP

Best Arabidopsis Sequence Match ( AT5G09230.7 )
(BLAST)

001: MLSMNMRRVF GGVSTDLFPS RSMYRPLQSG GNLVMLFKGC RRFVRTTCRV SIPGGSLGNE SKAPPRFLRD RKIVPDADPP NMEDIHKLYR LFEQSSRLTI
101: LTGAGVSTEC GIPDYRSPNG AYSSGFKPIT HQEFTRSSRA RRRYWARSYA GWRRFTAAQP GPAHTALASL EKAGRINFMI TQNVDRLHHR AGSDPLELHG
201: TVYTVMCLEC GFSFPRDLFQ DQLKAINPKW AEAIESIDHG DPGSEKSFGM KQRPDGDIEI DEKFWEEGFH IPVCEKCKGV LKPDVIFFGD NIPKERATQA
301: MEVAKQSDAF LVLGSSLMTM SAFRLCRAAH EAGAMTAIVN IGETRADDIV PLKINARVGE ILHRVLDVGS LSVPAL

Arabidopsis Description

SRT2sirtuin 2 [Source:TAIR;Acc:AT5G09230]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.