CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53938	Soybean	plastid	89.06	89.29
KRH75061	Soybean	nucleus	25.45	81.3
CDY44790	Canola	mitochondrion	65.39	71.99
CDY40730	Canola	mitochondrion	65.14	71.71
PGSC0003DMT400082473	Potato	cytosol, mitochondrion	64.12	71.59
Bra028643.1-P	Field mustard	mitochondrion	64.89	71.43
AT5G09230.7	Thale cress	mitochondrion	67.43	70.48
Solyc04g009430.2.1	Tomato	mitochondrion	64.38	65.71
VIT_07s0031g02510.t01	Wine grape	mitochondrion	68.96	64.37
Zm00001d023585_P001	Maize	plastid	50.89	56.98
Os12t0179800-01	Rice	mitochondrion	56.74	56.74
TraesCS5D01G124700.1	Wheat	plastid	57.0	56.57
KXG23116	Sorghum	plastid	56.23	56.52
TraesCSU01G136000.1	Wheat	plastid	56.49	56.06
TraesCS5A01G114700.3	Wheat	cytosol	57.25	54.35
GSMUA_Achr6P25880_001	Banana	cytosol, plastid	59.29	50.65
HORVU5Hr1G037540.3	Barley	plastid	57.51	50.56
Zm00001d019276_P002	Maize	mitochondrion	17.56	35.75
Zm00001d047121_P003	Maize	plastid	17.3	17.99
Zm00001d046205_P001	Maize	cytosol	20.87	17.71
KRG98474	Soybean	nucleus	21.37	17.54
KRH46385	Soybean	nucleus	19.08	17.32

Protein Annotations

EntrezGene:100815194	MapMan:12.3.2.3	MapMan:18.2.7	Gene3D:3.30.1600.10	Gene3D:3.40.50.1220	EMBL:ACUP02002736
InterPro:DHS-like_NAD/FAD-binding_dom	EnsemblPlantsGene:GLYMA_04G210000	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759
GO:GO:0006464	GO:GO:0006471	GO:GO:0006476	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0034979	GO:GO:0046872
GO:GO:0070403	UniProt:I1JXZ2	InterPro:IPR026590	InterPro:IPR026591	EnsemblPlants:KRH64001	ProteinID:KRH64001
ProteinID:KRH64001.1	HAMAP:MF_01967	PFAM:PF02146	PFscan:PS50305	PANTHER:PTHR43688	SUPFAM:SSF52467
InterPro:Sirtuin	InterPro:Sirtuin_cat_small_dom_sf	InterPro:Sirtuin_class_II	InterPro:Ssirtuin_cat_dom	UniParc:UPI0001E23A8D	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:48203086..48210323

Molecular Weight (calculated)

43467.1 Da

IEP (calculated)

9.687

GRAVY (calculated)

-0.259

Length

393 amino acids

Sequence
(BLAST)

001: MAMSLPLRFY SSSSFSLTSL GVVRKVLGTL TTDIVQPRSG NWHLAKRGGR LISFKGRARL VHTTCRISVP GTLPRTDEKA SSNISRDKKT VPEADPPSIK
101: DVQLLYEFLD RSTKLTVLTG AGISTECGIP DYRSPNGAYS SGFKPITHQE FLRSSRARRR YWARSYAGWR RFTTAQPSAA HTALATLDKA GRINFMITQN
201: VDRLHHRAGS NPLEIHGTVY TVICIDCGYS FCRSLFQDQL KTLNPKWAEA IDNLDHGNPG SDKSFGMKQR PDGDIEIDER FWEEDFTIPT CHKCNGALKP
301: DVVFFGDNVP KDRADMAMEA SRRCDAFLVL GSSLMTMSAF RLIRAAHEAG AATAIVNIGV TRADDFVPLK INARLGEILP RVLDIGSISI PAV

Best Arabidopsis Sequence Match ( AT5G09230.7 )
(BLAST)

001: MLSMNMRRVF GGVSTDLFPS RSMYRPLQSG GNLVMLFKGC RRFVRTTCRV SIPGGSLGNE SKAPPRFLRD RKIVPDADPP NMEDIHKLYR LFEQSSRLTI
101: LTGAGVSTEC GIPDYRSPNG AYSSGFKPIT HQEFTRSSRA RRRYWARSYA GWRRFTAAQP GPAHTALASL EKAGRINFMI TQNVDRLHHR AGSDPLELHG
201: TVYTVMCLEC GFSFPRDLFQ DQLKAINPKW AEAIESIDHG DPGSEKSFGM KQRPDGDIEI DEKFWEEGFH IPVCEKCKGV LKPDVIFFGD NIPKERATQA
301: MEVAKQSDAF LVLGSSLMTM SAFRLCRAAH EAGAMTAIVN IGETRADDIV PLKINARVGE ILHRVLDVGS LSVPAL

Arabidopsis Description

SRT2sirtuin 2 [Source:TAIR;Acc:AT5G09230]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.