CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46385	Soybean	nucleus	88.1	97.46
VIT_19s0015g00570.t01	Wine grape	cytosol	72.44	75.93
CDY36763	Canola	cytosol	68.89	70.51
Solyc07g065550.2.1	Tomato	cytosol	69.31	70.34
Bra028961.1-P	Field mustard	cytosol	68.68	70.3
CDY11980	Canola	cytosol	68.68	70.3
PGSC0003DMT400057382	Potato	cytosol	63.26	70.14
AT5G55760.1	Thale cress	cytosol, nucleus, peroxisome	68.27	69.13
TraesCS2B01G092700.1	Wheat	cytosol	57.83	59.57
KXG26572	Sorghum	cytosol	58.46	58.82
Os04t0271000-01	Rice	cytosol	59.29	58.8
TraesCS2A01G077800.1	Wheat	cytosol	53.65	58.41
Zm00001d025705_P008	Maize	cytosol	58.04	55.6
GSMUA_Achr8P24470_001	Banana	cytosol	60.33	53.82
TraesCS2D01G075800.1	Wheat	cytosol	58.04	41.0
HORVU2Hr1G012930.6	Barley	mitochondrion	56.99	38.29
KRH75061	Soybean	nucleus	6.26	24.39
KRH64001	Soybean	plastid	17.54	21.37
KRH53938	Soybean	plastid	16.08	19.64

Protein Annotations

EntrezGene:100803586	MapMan:12.3.2.3	Gene3D:2.20.28.200	Gene3D:3.40.50.1220	EMBL:ACUP02010890	InterPro:DHS-like_NAD/FAD-binding_dom
EnsemblPlantsGene:GLYMA_18G076300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0070403	UniProt:I1N098
InterPro:IPR026590	EnsemblPlants:KRG98474	ProteinID:KRG98474	ProteinID:KRG98474.1	PFAM:PF02146	PFscan:PS50305
PANTHER:PTHR11085	PANTHER:PTHR11085:SF20	SUPFAM:SSF52467	InterPro:Sirtuin	InterPro:Ssirtuin_cat_dom	UniParc:UPI000233DF9A
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:7229159..7242024

Molecular Weight (calculated)

53198.5 Da

IEP (calculated)

9.333

GRAVY (calculated)

-0.223

Length

479 amino acids

Sequence
(BLAST)

001: MSLGYAEKLS YIEDVGNVGM VEYFDPSHVL REKIDQLAIM IKKSKHLVVF TGAGISTSCG IPDFRGPKGI WTLQREGKAL PEASLPFHRA APSMTHMALV
101: ELEKAGILKF VISQNVDGLH LRSGIPREKL AELHGNSFME TCPSCGEEYF RDFEVETIGL KETSRRCSVA KCGTRLKDTV LDWEDALPTK EMNPAEKHCK
201: QADIVLCLGT SLQITPACNL PLKALRGGGK VVIVNLQKTP KDKKASLVIH GFVDKVIAGV MDQLNMQISP FVRIDLFQII LVQALSNDKR YVNWTLQVAS
301: AHGQKAALPF IKSVEISFLD REDYKAAILD KQPFRLKRRT AYNKAFEMVL KLNFSDGCGC SSLEIDVPVD FKVSTDCFDF DKDYIFQKLR DKAVLESRCG
401: QNAVIERKTI LTPRSDVTTY AIVTNVVQYS KACKAALDSL SNGDFKKRKA SVTGTGSSRK RSKGSSKCKS RSDNIRGHT

Best Arabidopsis Sequence Match ( AT5G55760.1 )
(BLAST)

001: MSLGYAEKLS FIEDVGQVGM AEFFDPSHLL QCKIEELAKL IQKSKHLVVF TGAGISTSCG IPDFRGPKGI WTLQREGKDL PKASLPFHRA MPSMTHMALV
101: ELERAGILKF VISQNVDGLH LRSGIPREKL SELHGDSFME MCPSCGAEYL RDFEVETIGL KETSRKCSVE KCGAKLKDTV LDWEDALPPK EIDPAEKHCK
201: KADLVLCLGT SLQITPACNL PLKCLKGGGK IVIVNLQKTP KDKKANVVIH GLVDKVVAGV MESLNMKIPP YVRIDLFQII LTQSISGDQR FINWTLRVAS
301: VHGLTSQLPF IKSIEVSFSD NHNYKDAVLD KQPFLMKRRT ARNETFDIFF KVNYSDGCDC VSTQLSLPFE FKISTEEHVE IIDKEAVLQS LREKAVEESS
401: CGQSGVVERR VVSEPRSEAV VYATVTSLRT YHSQQSLLAN GDLKWKLEGS GTSRKRSRTG KRKSKALAEE TKA

Arabidopsis Description

SRT1SRT1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR49]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.