CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 1
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98474	Soybean	nucleus	97.46	88.1
VIT_19s0015g00570.t01	Wine grape	cytosol	74.13	70.24
PGSC0003DMT400057382	Potato	cytosol	69.98	70.14
CDY36763	Canola	cytosol	70.21	64.96
Bra028961.1-P	Field mustard	cytosol	69.98	64.74
CDY11980	Canola	cytosol	69.52	64.32
Solyc07g065550.2.1	Tomato	cytosol	69.98	64.19
AT5G55760.1	Thale cress	cytosol, nucleus, peroxisome	68.59	62.79
TraesCS2A01G077800.1	Wheat	cytosol	58.89	57.95
TraesCS2B01G092700.1	Wheat	cytosol	58.2	54.19
KXG26572	Sorghum	cytosol	59.12	53.78
Os04t0271000-01	Rice	cytosol	59.35	53.21
Zm00001d025705_P008	Maize	cytosol	58.66	50.8
GSMUA_Achr8P24470_001	Banana	cytosol	60.74	48.98
TraesCS2D01G075800.1	Wheat	cytosol	58.43	37.32
HORVU2Hr1G012930.6	Barley	mitochondrion	57.27	34.78
KRH75061	Soybean	nucleus	6.47	22.76
KRH64001	Soybean	plastid	17.32	19.08
KRH53938	Soybean	plastid	16.17	17.86

Protein Annotations

EntrezGene:100784468	MapMan:12.3.2.3	Gene3D:2.20.28.200	Gene3D:3.40.50.1220	EMBL:ACUP02005341	InterPro:DHS-like_NAD/FAD-binding_dom
EnsemblPlantsGene:GLYMA_08G330200	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0070403	UniProt:I1KYK3
InterPro:IPR026590	EnsemblPlants:KRH46385	ProteinID:KRH46385	ProteinID:KRH46385.1	PFAM:PF02146	PFscan:PS50305
PFscan:PS51257	PANTHER:PTHR11085	PANTHER:PTHR11085:SF20	SUPFAM:SSF52467	InterPro:Sirtuin	InterPro:Ssirtuin_cat_dom
UniParc:UPI00023CB12F	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:44792315..44802417

Molecular Weight (calculated)

48097.4 Da

IEP (calculated)

9.191

GRAVY (calculated)

-0.212

Length

433 amino acids

Sequence
(BLAST)

001: MIKKSKHLVV FTGAGISTSC GIPDFRGPKG IWTLQREGKA LPEASLPFHR AAPSLTHMAL VELEKAGILK FVISQNVDGL HLRSGIPREK LAELHGNSFM
101: ETCPSCGEEY FRDFEVETIG LKETSRRCSV AKCGTRLKDT VLDWEDALPS KEMNPAEKHC KQADIVLCLG TSLQITPACN LPLKALRGGG KVVIVNLQKT
201: PKDKKASLVI HGFVDKVIAG VMDQLNMQIH PFVRIDLFQI ILVQALSNDE RYVNWTLQVA SVHGQKAALP FIESVEISFL DREDYKAAIL DKQPFRLKRR
301: TAYNKAFEMV LKLNFSDGCG CSSLEIDVPV DFKVSTDCFD FDKDYIFQKL RDKAVLESRC GQNAVIERKA ILTPRSDVTT YAIVTNVVQY SKTCKAALDS
401: LSNGDFKKRK ASVTGTGSSR KRSKGSSKCK REC

Best Arabidopsis Sequence Match ( AT5G55760.1 )
(BLAST)

001: MSLGYAEKLS FIEDVGQVGM AEFFDPSHLL QCKIEELAKL IQKSKHLVVF TGAGISTSCG IPDFRGPKGI WTLQREGKDL PKASLPFHRA MPSMTHMALV
101: ELERAGILKF VISQNVDGLH LRSGIPREKL SELHGDSFME MCPSCGAEYL RDFEVETIGL KETSRKCSVE KCGAKLKDTV LDWEDALPPK EIDPAEKHCK
201: KADLVLCLGT SLQITPACNL PLKCLKGGGK IVIVNLQKTP KDKKANVVIH GLVDKVVAGV MESLNMKIPP YVRIDLFQII LTQSISGDQR FINWTLRVAS
301: VHGLTSQLPF IKSIEVSFSD NHNYKDAVLD KQPFLMKRRT ARNETFDIFF KVNYSDGCDC VSTQLSLPFE FKISTEEHVE IIDKEAVLQS LREKAVEESS
401: CGQSGVVERR VVSEPRSEAV VYATVTSLRT YHSQQSLLAN GDLKWKLEGS GTSRKRSRTG KRKSKALAEE TKA

Arabidopsis Description

SRT1SRT1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR49]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.