Factsheet for Zm00001d025705_P008

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26572	Sorghum	cytosol	90.0	94.54
TraesCS2B01G092700.1	Wheat	cytosol	75.0	80.65
TraesCS2A01G077800.1	Wheat	cytosol	70.0	79.55
Os04t0271000-01	Rice	cytosol	75.4	78.05
Solyc07g065550.2.1	Tomato	cytosol	56.8	60.17
PGSC0003DMT400057382	Potato	cytosol	51.4	59.49
VIT_19s0015g00570.t01	Wine grape	cytosol	54.2	59.3
KRH46385	Soybean	nucleus	50.8	58.66
KRG98474	Soybean	nucleus	55.6	58.04
GSMUA_Achr8P24470_001	Banana	cytosol	61.4	57.17
CDY36763	Canola	cytosol	53.2	56.84
Bra028961.1-P	Field mustard	cytosol	53.0	56.62
CDY11980	Canola	cytosol	52.8	56.41
AT5G55760.1	Thale cress	cytosol, nucleus, peroxisome	53.0	56.03
TraesCS2D01G075800.1	Wheat	cytosol	75.8	55.9
HORVU2Hr1G012930.6	Barley	mitochondrion	74.2	52.03
Zm00001d019276_P002	Maize	mitochondrion	9.4	24.35
Zm00001d023585_P001	Maize	plastid	13.6	19.37
Zm00001d047121_P003	Maize	plastid	8.6	11.38
Zm00001d046205_P001	Maize	cytosol	8.2	8.86

Protein Annotations

MapMan:12.3.2.3	Gene3D:2.20.28.200	Gene3D:3.40.50.1220	EntrezGene:542568	UniProt:A0A1D6J8Q3	ProteinID:AQK44307.1
InterPro:DHS-like_NAD/FAD-binding_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0070403	InterPro:IPR026590
PFAM:PF02146	PFscan:PS50305	PANTHER:PTHR11085	PANTHER:PTHR11085:SF20	SUPFAM:SSF52467	InterPro:Sirtuin
InterPro:Ssirtuin_cat_dom	UniParc:UPI000842CCDC	EnsemblPlantsGene:Zm00001d025705	EnsemblPlants:Zm00001d025705_P008	EnsemblPlants:Zm00001d025705_T008	SEG:seg

Description

NAD-dependent protein deacetylase SRT1

Coordinates

chr10:-:126856805..126878792

Molecular Weight (calculated)

56149.3 Da

IEP (calculated)

8.805

GRAVY (calculated)

-0.232

Length

500 amino acids

Sequence
(BLAST)

001: MSLGYAEKLS YREDVGTVGM PEIFETPELV QNKTNRGTLN DCCAFTFYFF LPGLLMQIEE LAAMVQKSKH LVVFTGAGIS TSSGIPDFRG PMGVWTLQRA
101: GKGIPNASLP FHHAVPSLTH MALVELERAG FLKFVISQNV DSLHLRSGFP REKLAELHGN SFKEICPCCK TEYLRDFEIE TIGLKDTPRR CSDKNCGARL
201: KDTVLDWDDA LPPEEMNLAT EHCRSADLVL CLGTSLQITP ACNMPLMSIK NGGRVAIVNL QATPKDKKAS LVIHGLVDKV IAGVMSKLSL RIPPYIRTDF
301: VQLTLRHSLK KKCVRWTLRV TSIHGLRAPL PFLQSVKVSF PERPDLKSVV LKEQPFSLQR ETSMNKPFFM LLTLNFSDGC SCLSSSIGWP VDFQKRKDSF
401: VRDRALVLRE LYSAAQRESC IGQQEILERE NLPRAETSIH GIVTNIVRYD TEDEKLAPPK NDLMNHSRSN PAKRHVEGTD CHSSLPKKLK YFLKDKKLNC

Best Arabidopsis Sequence Match ( AT5G55760.1 )
(BLAST)

001: MSLGYAEKLS FIEDVGQVGM AEFFDPSHLL QCKIEELAKL IQKSKHLVVF TGAGISTSCG IPDFRGPKGI WTLQREGKDL PKASLPFHRA MPSMTHMALV
101: ELERAGILKF VISQNVDGLH LRSGIPREKL SELHGDSFME MCPSCGAEYL RDFEVETIGL KETSRKCSVE KCGAKLKDTV LDWEDALPPK EIDPAEKHCK
201: KADLVLCLGT SLQITPACNL PLKCLKGGGK IVIVNLQKTP KDKKANVVIH GLVDKVVAGV MESLNMKIPP YVRIDLFQII LTQSISGDQR FINWTLRVAS
301: VHGLTSQLPF IKSIEVSFSD NHNYKDAVLD KQPFLMKRRT ARNETFDIFF KVNYSDGCDC VSTQLSLPFE FKISTEEHVE IIDKEAVLQS LREKAVEESS
401: CGQSGVVERR VVSEPRSEAV VYATVTSLRT YHSQQSLLAN GDLKWKLEGS GTSRKRSRTG KRKSKALAEE TKA

Arabidopsis Description

SRT1SRT1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR49]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.