Factsheet for VIT_19s0015g00570.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46385	Soybean	nucleus	70.24	74.13
KRG98474	Soybean	nucleus	75.93	72.44
PGSC0003DMT400057382	Potato	cytosol	67.4	71.3
Solyc07g065550.2.1	Tomato	cytosol	72.43	70.13
CDY36763	Canola	cytosol	70.9	69.23
Bra028961.1-P	Field mustard	cytosol	70.68	69.02
CDY11980	Canola	cytosol	70.68	69.02
AT5G55760.1	Thale cress	cytosol, nucleus, peroxisome	70.24	67.86
TraesCS2B01G092700.1	Wheat	cytosol	60.18	59.14
TraesCS2A01G077800.1	Wheat	cytosol	56.02	58.18
KXG26572	Sorghum	cytosol	60.39	57.98
Os04t0271000-01	Rice	cytosol	59.52	56.31
Zm00001d025705_P008	Maize	cytosol	59.3	54.2
GSMUA_Achr8P24470_001	Banana	cytosol	60.61	51.58
TraesCS2D01G075800.1	Wheat	cytosol	60.39	40.71
HORVU2Hr1G012930.6	Barley	mitochondrion	58.86	37.73
VIT_07s0031g02510.t01	Wine grape	mitochondrion	16.19	17.58

Protein Annotations

EntrezGene:100261752	wikigene:100261752	MapMan:12.3.2.3	Gene3D:2.20.28.200	Gene3D:3.40.50.1220	ProteinID:AEV46830
ProteinID:AEV46830.1	ProteinID:CCB62014	ProteinID:CCB62014.1	InterPro:DHS-like_NAD/FAD-binding_dom	UniProt:F6I559	EMBL:FN596747
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0070403	InterPro:IPR026590	EMBL:JN252254
EntrezGene:LOC100261752	wikigene:LOC100261752	PFAM:PF02146	PFscan:PS50305	PANTHER:PTHR11085	PANTHER:PTHR11085:SF20
SUPFAM:SSF52467	InterPro:Sirtuin	InterPro:Ssirtuin_cat_dom	UniParc:UPI0002109BBA	ArrayExpress:VIT_19s0015g00570	EnsemblPlantsGene:VIT_19s0015g00570
EnsemblPlants:VIT_19s0015g00570.t01	RefSeq:XP_002265837	RefSeq:XP_002265837.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr19:+:8637659..8659970

Molecular Weight (calculated)

50845.2 Da

IEP (calculated)

9.277

GRAVY (calculated)

-0.199

Length

457 amino acids

Sequence
(BLAST)

001: MSLGYAEKLS YIEDVGKVGM SEICDPLHVL QEKSKHLVVF TGAGISTSCG IPDFRGPKGI WTLQREGKAL PQASLPFHRA MPSMTHMALV ELEKAGILKF
101: VISQNIDGLH LRSGIPRDKL AELHGNSFME ICSSCGIEYL RDFEVETIGL KETSRRCSNV DCGAKLRDTV LDWEDALPPK EMNPAEKHCR MADVVLCLGT
201: SLQITPACNL PLKSLRGGGK IVIVNLQETP KDKKASLVIH GFVDKVIAGV MDRLNMRIPP FVRIDLFQVI LTHTLSSDKR FVNWILRVAS VHGQKAPLPF
301: IKYVEVSFLD GQNYKEAVLH KQPFQLKRRT VKTKIFEVLL KLNFSDGCGC LSSQIKVPID FKVSTDCFNY DKDAILQKLR DTATGDPCCG RHEVIEKKPI
401: PDPRSEATVY AIVTNVLQYN KTAPESNGSV MKGRLGGLNG IETSWKRSRS GKRKPRS

Best Arabidopsis Sequence Match ( AT5G55760.1 )
(BLAST)

001: MSLGYAEKLS FIEDVGQVGM AEFFDPSHLL QCKIEELAKL IQKSKHLVVF TGAGISTSCG IPDFRGPKGI WTLQREGKDL PKASLPFHRA MPSMTHMALV
101: ELERAGILKF VISQNVDGLH LRSGIPREKL SELHGDSFME MCPSCGAEYL RDFEVETIGL KETSRKCSVE KCGAKLKDTV LDWEDALPPK EIDPAEKHCK
201: KADLVLCLGT SLQITPACNL PLKCLKGGGK IVIVNLQKTP KDKKANVVIH GLVDKVVAGV MESLNMKIPP YVRIDLFQII LTQSISGDQR FINWTLRVAS
301: VHGLTSQLPF IKSIEVSFSD NHNYKDAVLD KQPFLMKRRT ARNETFDIFF KVNYSDGCDC VSTQLSLPFE FKISTEEHVE IIDKEAVLQS LREKAVEESS
401: CGQSGVVERR VVSEPRSEAV VYATVTSLRT YHSQQSLLAN GDLKWKLEGS GTSRKRSRTG KRKSKALAEE TKA

Arabidopsis Description

SRT1SRT1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR49]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.