CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra028961.1-P	Field mustard	cytosol	99.15	99.15
CDY36763	Canola	cytosol	98.93	98.93
AT5G55760.1	Thale cress	cytosol, nucleus, peroxisome	89.1	88.16
VIT_19s0015g00570.t01	Wine grape	cytosol	69.02	70.68
KRH46385	Soybean	nucleus	64.32	69.52
KRG98474	Soybean	nucleus	70.3	68.68
Solyc07g065550.2.1	Tomato	cytosol	68.16	67.58
PGSC0003DMT400057382	Potato	cytosol	61.97	67.13
TraesCS2B01G092700.1	Wheat	cytosol	57.05	57.42
TraesCS2A01G077800.1	Wheat	cytosol	52.78	56.14
KXG26572	Sorghum	cytosol	57.05	56.09
Os04t0271000-01	Rice	cytosol	57.48	55.69
Zm00001d025705_P008	Maize	cytosol	56.41	52.8
GSMUA_Achr8P24470_001	Banana	cytosol	59.19	51.58
TraesCS2D01G075800.1	Wheat	cytosol	57.27	39.53
HORVU2Hr1G012930.6	Barley	mitochondrion	56.84	37.31
CDY40730	Canola	mitochondrion	17.95	23.53
CDY44790	Canola	mitochondrion	17.52	22.97

Protein Annotations

MapMan:12.3.2.3	Gene3D:2.20.28.200	Gene3D:3.40.50.1220	GO:A0A078FC40	UniProt:A0A078FC40	EnsemblPlants:CDY11980
ProteinID:CDY11980	ProteinID:CDY11980.1	InterPro:DHS-like_NAD/FAD-binding_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0070403	EnsemblPlantsGene:GSBRNA2T00060830001	InterPro:IPR026590	PFAM:PF02146	PFscan:PS50305	PANTHER:PTHR11085
PANTHER:PTHR11085:SF20	SUPFAM:SSF52467	InterPro:Sirtuin	InterPro:Ssirtuin_cat_dom	UniParc:UPI0004EC23A5	SEG:seg

Description

BnaC03g14060DBnaC03g14060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FC40]

Coordinates

chrLK032015:-:691079..694303

Molecular Weight (calculated)

52387.3 Da

IEP (calculated)

7.258

GRAVY (calculated)

-0.267

Length

468 amino acids

Sequence
(BLAST)

001: MSLGYAEKLS FIEDVGQVGM AEFFDPSHVL QCKIEELAKM IQKSKHLVVF TGAGISTSCG IPDFRGPKGI WTLQREGKDL PKASLPFHRA MPSMTHMALV
101: ELERAGILKF VISQNVDGLH LRSGIPREKL SELHGDSFME MCPSCGAEYL RDFEVETIGL KETSRKCSNA KCGAKLKDTV LDWEDALPPK EIDPAEKHCK
201: IADLVLCLGT SLQITPACNL PLKCLRGGGK IVIVNLQKTP KDKKADVVIH GFVDKVVAGV METLNMQIPP YVRIDLFQII LNQSLSRDER YINWTLRVAS
301: VHGLTSQLPF IGSVEVSFSD NHNFKDAVLD EQPFIIKRRT TETETFDIFL KINYSEGCDC LSTKITIPFK YEVSTEEHEE ETIDKEAVLQ SLREKAVEES
401: SCGQSGVVER RFVSEPRSET IVYATVTNLR TFHCQQSVLA NGDLRWKMEG SGTTSRKRSR TGKRKPRA

Best Arabidopsis Sequence Match ( AT5G55760.1 )
(BLAST)

001: MSLGYAEKLS FIEDVGQVGM AEFFDPSHLL QCKIEELAKL IQKSKHLVVF TGAGISTSCG IPDFRGPKGI WTLQREGKDL PKASLPFHRA MPSMTHMALV
101: ELERAGILKF VISQNVDGLH LRSGIPREKL SELHGDSFME MCPSCGAEYL RDFEVETIGL KETSRKCSVE KCGAKLKDTV LDWEDALPPK EIDPAEKHCK
201: KADLVLCLGT SLQITPACNL PLKCLKGGGK IVIVNLQKTP KDKKANVVIH GLVDKVVAGV MESLNMKIPP YVRIDLFQII LTQSISGDQR FINWTLRVAS
301: VHGLTSQLPF IKSIEVSFSD NHNYKDAVLD KQPFLMKRRT ARNETFDIFF KVNYSDGCDC VSTQLSLPFE FKISTEEHVE IIDKEAVLQS LREKAVEESS
401: CGQSGVVERR VVSEPRSEAV VYATVTSLRT YHSQQSLLAN GDLKWKLEGS GTSRKRSRTG KRKSKALAEE TKA

Arabidopsis Description

SRT1SRT1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR49]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.