Skip to main content
crop-pal logo
Thale cress
Search for another protein from :
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • peroxisome 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, nucleus, peroxisome
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:peroxisome
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra028961.1-P Field mustard cytosol 88.16 89.1
CDY11980 Canola cytosol 88.16 89.1
CDY36763 Canola cytosol 87.95 88.89
VIT_19s0015g00570.t01 Wine grape cytosol 67.86 70.24
KRH46385 Soybean nucleus 62.79 68.59
KRG98474 Soybean nucleus 69.13 68.27
Solyc07g065550.2.1 Tomato cytosol 68.08 68.22
PGSC0003DMT400057382 Potato cytosol 61.52 67.36
TraesCS2B01G092700.1 Wheat cytosol 56.66 57.63
TraesCS2A01G077800.1 Wheat cytosol 52.22 56.14
Os04t0271000-01 Rice cytosol 57.08 55.9
KXG26572 Sorghum cytosol 56.24 55.88
Zm00001d025705_P008 Maize cytosol 56.03 53.0
GSMUA_Achr8P24470_001 Banana cytosol 58.77 51.77
TraesCS2D01G075800.1 Wheat cytosol 56.87 39.68
HORVU2Hr1G012930.6 Barley mitochondrion 56.66 37.59
AT5G09230.7 Thale cress mitochondrion 17.12 21.54
Protein Annotations
MapMan:12.3.2.3Gene3D:2.20.28.200Gene3D:3.40.50.1220EntrezGene:835670UniProt:A0A178UR49ProteinID:AED96677.1
EMBL:AF283757EMBL:AK227432ArrayExpress:AT5G55760EnsemblPlantsGene:AT5G55760RefSeq:AT5G55760TAIR:AT5G55760
RefSeq:AT5G55760-TAIR-GEnsemblPlants:AT5G55760.1TAIR:AT5G55760.1Unigene:At.20180ProteinID:BAB09243.1EMBL:BT008767
InterPro:DHS-like_NAD/FAD-binding_domGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006464GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016043GO:GO:0016787GO:GO:0019538GO:GO:0043970
GO:GO:0046872GO:GO:0070403InterPro:IPR026590RefSeq:NP_200387.1ProteinID:OAO96143.1PFAM:PF02146
PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230PO:PO:0000293PO:PO:0001017
PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064
PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611
PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137
PO:PO:0025022PO:PO:0025281PFscan:PS50305PANTHER:PTHR11085PANTHER:PTHR11085:SF20UniProt:Q9FE17
Symbol:SRT1SUPFAM:SSF52467InterPro:SirtuinInterPro:Ssirtuin_cat_domUniParc:UPI00000AAC08SEG:seg
Description
SRT1SRT1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR49]
Coordinates
chr5:+:22567222..22571008
Molecular Weight (calculated)
52644.9 Da
IEP (calculated)
8.366
GRAVY (calculated)
-0.236
Length
473 amino acids
Sequence
(BLAST)
001: MSLGYAEKLS FIEDVGQVGM AEFFDPSHLL QCKIEELAKL IQKSKHLVVF TGAGISTSCG IPDFRGPKGI WTLQREGKDL PKASLPFHRA MPSMTHMALV
101: ELERAGILKF VISQNVDGLH LRSGIPREKL SELHGDSFME MCPSCGAEYL RDFEVETIGL KETSRKCSVE KCGAKLKDTV LDWEDALPPK EIDPAEKHCK
201: KADLVLCLGT SLQITPACNL PLKCLKGGGK IVIVNLQKTP KDKKANVVIH GLVDKVVAGV MESLNMKIPP YVRIDLFQII LTQSISGDQR FINWTLRVAS
301: VHGLTSQLPF IKSIEVSFSD NHNYKDAVLD KQPFLMKRRT ARNETFDIFF KVNYSDGCDC VSTQLSLPFE FKISTEEHVE IIDKEAVLQS LREKAVEESS
401: CGQSGVVERR VVSEPRSEAV VYATVTSLRT YHSQQSLLAN GDLKWKLEGS GTSRKRSRTG KRKSKALAEE TKA
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.