Factsheet for PGSC0003DMT400057382

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g065550.2.1	Tomato	cytosol	99.31	90.89
KRH46385	Soybean	nucleus	70.14	69.98
VIT_19s0015g00570.t01	Wine grape	cytosol	71.3	67.4
KRG98474	Soybean	nucleus	70.14	63.26
CDY36763	Canola	cytosol	67.82	62.61
Bra028961.1-P	Field mustard	cytosol	67.59	62.39
CDY11980	Canola	cytosol	67.13	61.97
AT5G55760.1	Thale cress	cytosol, nucleus, peroxisome	67.36	61.52
TraesCS2A01G077800.1	Wheat	cytosol	59.03	57.95
TraesCS2B01G092700.1	Wheat	cytosol	58.8	54.62
KXG26572	Sorghum	cytosol	59.72	54.2
Os04t0271000-01	Rice	cytosol	58.8	52.59
Zm00001d025705_P008	Maize	cytosol	59.49	51.4
GSMUA_Achr8P24470_001	Banana	cytosol	58.8	47.3
TraesCS2D01G075800.1	Wheat	cytosol	59.03	37.61
HORVU2Hr1G012930.6	Barley	mitochondrion	58.33	35.34
PGSC0003DMT400082473	Potato	cytosol, mitochondrion	17.13	21.02

Protein Annotations

EnsemblPlants:PGSC0003DMT400057382	EnsemblPlantsGene:PGSC0003DMG400022278	Gene3D:2.20.28.200	Gene3D:3.40.50.1220	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0070403	InterPro:DHS-like_NAD/FAD-binding_dom	InterPro:IPR026590	InterPro:Sirtuin	InterPro:Ssirtuin_cat_dom
PANTHER:PTHR11085	PANTHER:PTHR11085:SF20	PFAM:PF02146	PFscan:PS50305	PFscan:PS51257	PGSC:PGSC0003DMG400022278
SUPFAM:SSF52467	UniParc:UPI0002956BE5	UniProt:M1C0X8	MapMan:12.3.2.3	:	:

Description

Histone deacetylase [Source:PGSC_GENE;Acc:PGSC0003DMG400022278]

Coordinates

chr7:+:55518213..55527275

Molecular Weight (calculated)

47973.8 Da

IEP (calculated)

9.832

GRAVY (calculated)

-0.152

Length

432 amino acids

Sequence
(BLAST)

001: MIQKSKHLVV FTGAGISTSC GIPDFRGPKG IWTLQREGKA LPEASLPFHR ATPSMTHMAL VELEKAGFLK FLISQNIDGL HLRSGIPREK LSELHGDSFM
101: ERCPSCGIEY MRDFEIETIG LKETARRCSK VGCGARLKDT VLDWEDALPP KEMNPAERHC KMADVVLCLG TSLQITPACN LPLKSLKGGG KIVIVNLQKT
201: PKDKKASLLI HGLVDKVITG VMEFLSLRIP PFIRIDLLQT IFTQASSLDE KYVNWSLTVA SVHGNRAPLP FIKSVEVSFS ESQNMKAAVL DKQPLYLKRR
301: TVKSTNPFNI MMKLNFSDGC KCSSAEITIP IDFKISADVF KDDKDSILQN LRESALTDPS CGQTSVIEKK VIMVPKSEVI VHAIVTNIVK FDRSYGDLSN
401: GSFKRKYECL NGVIPSRKRS NGRKPRAVIN VR

Best Arabidopsis Sequence Match ( AT5G55760.1 )
(BLAST)

001: MSLGYAEKLS FIEDVGQVGM AEFFDPSHLL QCKIEELAKL IQKSKHLVVF TGAGISTSCG IPDFRGPKGI WTLQREGKDL PKASLPFHRA MPSMTHMALV
101: ELERAGILKF VISQNVDGLH LRSGIPREKL SELHGDSFME MCPSCGAEYL RDFEVETIGL KETSRKCSVE KCGAKLKDTV LDWEDALPPK EIDPAEKHCK
201: KADLVLCLGT SLQITPACNL PLKCLKGGGK IVIVNLQKTP KDKKANVVIH GLVDKVVAGV MESLNMKIPP YVRIDLFQII LTQSISGDQR FINWTLRVAS
301: VHGLTSQLPF IKSIEVSFSD NHNYKDAVLD KQPFLMKRRT ARNETFDIFF KVNYSDGCDC VSTQLSLPFE FKISTEEHVE IIDKEAVLQS LREKAVEESS
401: CGQSGVVERR VVSEPRSEAV VYATVTSLRT YHSQQSLLAN GDLKWKLEGS GTSRKRSRTG KRKSKALAEE TKA

Arabidopsis Description

SRT1SRT1 [Source:UniProtKB/TrEMBL;Acc:A0A178UR49]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.