Factsheet for PGSC0003DMT400038538

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 7
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0129g00230.t01	Wine grape	vacuole	54.43	52.06
KRH77114	Soybean	extracellular, vacuole	48.35	48.35
KRH28365	Soybean	vacuole	48.35	47.99
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane, vacuole	38.48	42.94
PGSC0003DMT400015724	Potato	extracellular	12.15	42.11
Bra031835.1-P	Field mustard	vacuole	40.0	41.69
AT5G67460.1	Thale cress	vacuole	40.0	41.58
CDY37850	Canola	vacuole	39.49	41.05
CDY43577	Canola	vacuole	38.73	40.05
Os10t0347000-01	Rice	endoplasmic reticulum, extracellular, vacuole	33.92	38.95
PGSC0003DMT400059279	Potato	cytosol	10.89	36.13
PGSC0003DMT400045877	Potato	extracellular	9.62	35.51
PGSC0003DMT400034582	Potato	extracellular	10.38	35.34
VIT_09s0002g06500.t01	Wine grape	cytosol, peroxisome, plastid	30.89	33.06
PGSC0003DMT400025000	Potato	nucleus	20.76	29.5
PGSC0003DMT400044716	Potato	extracellular	15.44	25.0
PGSC0003DMT400063348	Potato	extracellular	11.39	24.32
PGSC0003DMT400011608	Potato	mitochondrion	10.89	22.87
PGSC0003DMT400003054	Potato	extracellular	10.89	22.51
PGSC0003DMT400080365	Potato	endoplasmic reticulum, extracellular	11.14	21.57
PGSC0003DMT400072939	Potato	extracellular	11.14	21.36
PGSC0003DMT400047134	Potato	extracellular, golgi, vacuole	16.71	18.23
PGSC0003DMT400024290	Potato	extracellular, vacuole	11.39	13.01

Protein Annotations

KEGG:00500+3.2.1.39	Gene3D:3.20.20.80	MapMan:50.3.2	ProteinID:AFU52652	ProteinID:AFU52652.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:Glyco_hydro_17	InterPro:Glycoside_hydrolase_SF	EMBL:JX838871	UniProt:M1B720	PFAM:PF00332	PFAM:PF07983
EnsemblPlantsGene:PGSC0003DMG400014878	PGSC:PGSC0003DMG400014878	EnsemblPlants:PGSC0003DMT400038538	PANTHER:PTHR32227	PANTHER:PTHR32227:SF98	SMART:SM00768
SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI00029583BF	InterPro:X8	SEG:seg	:

Description

Glycosyl hydrolase family protein 17 [Source:PGSC_GENE;Acc:PGSC0003DMG400014878]

Coordinates

chr3:+:7006149..7008392

Molecular Weight (calculated)

42798.1 Da

IEP (calculated)

6.928

GRAVY (calculated)

-0.028

Length

395 amino acids

Sequence
(BLAST)

001: MFMPWCFSHI FFLYFALNAA VGHESVELST LVTFPRTDIT TSAVSLPIQD LYGVSTSVLE AENWLRSNVL AHYPATNITT ILVGHTLLCK INQENRMRLI
101: LPSAKNIYYS LTRWGLHTEI KVSTSFSSNC LDQDSGLYNL DLAQEYIKPL LDFFQHVNAP YVVNLGYLDV KIESLMNSHI GSMKKLGNFS LNKIFLINEK
201: PKQGRSLSRK LSTFDSKYSN FPSRPTPLAP NPNLPSPAFA ANSPLPPLIG NISPPFAPEM APPLFNPISP SYGPHLPPCI PSHGGGWGGV GGPVGAPATG
301: GHGSSGLWCV AKPSVPPETL QEALDYACGE GDADCEAISP SGSCFYPDTV VAHASYAFNS YWQKTKGNGG TCGFGGTAML INSDPSYLHC RFILA

Best Arabidopsis Sequence Match ( AT5G67460.1 )
(BLAST)

001: MRHLLYIFLF IAFLSFAGAG QESTPIEALN LNNNLLQLPQ TTDLDLAVSV SGNKTITEIS SSIIKAETWL KTHILSRYPS TKITTIVIFF PDSCQTTQHS
101: SDLVLSSLKN IYHSLTRWGL ENNIKVSSGF SYQCLNNPKS SEMFKPVLIF LKTINSTFTI NPPQNFLTSP HNHRDLLHSV EKLGSLSFNK VNFLNPEPEQ
201: ESTTTMTRRN LRSLVNLSSK FTTSFPTLPS PSPETSPIHS SIGSPSPPTI PYFPEPSQSP MESNQGISLP PCLPYHPAPS PQPVKKKNVE GLWCVAKPSV
301: AAETLQQSLD FACGQGGANC DEIKPHGICY YPDTVMAHAS YAFNSYWQKT KRNGGTCSFG GTAMLITTDP SYQHCRFVLS

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FJX7]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.