Factsheet for Solyc12g013780.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090419	Potato	cytosol	49.06	94.82
VIT_02s0234g00010.t01	Wine grape	cytosol	64.88	67.79
Solyc10g045770.1.1	Tomato	cytosol	8.58	29.36
Solyc10g045690.1.1	Tomato	cytosol, nucleus, peroxisome	14.75	28.95
Solyc06g035530.2.1	Tomato	cytosol	28.69	28.76
Solyc11g013360.1.1	Tomato	cytosol	26.54	28.7
Solyc03g006880.2.1	Tomato	cytosol	28.95	28.57
Solyc06g050110.1.1	Tomato	cytosol	27.35	28.1
Solyc11g072310.1.1	Tomato	cytosol	28.42	27.97
Solyc01g108860.2.1	Tomato	cytosol	26.27	27.92
Solyc09g018420.1.1	Tomato	cytosol	7.77	27.88
Solyc09g009110.2.1	Tomato	cytosol	28.15	27.78
Solyc01g093980.2.1	Tomato	cytosol	27.08	27.75
Solyc01g108880.2.1	Tomato	cytosol, extracellular	25.74	27.43
Solyc09g042210.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	9.38	26.92
Solyc10g046820.1.1	Tomato	cytosol, nucleus, peroxisome	8.31	15.74

Protein Annotations

Gene3D:2.60.120.330	MapMan:50.1.13	InterPro:DIOX_N	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like
InterPro:IPR005123	InterPro:IPR027443	UniProt:K4DCR3	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF03171	PFAM:PF14226
PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF393	SUPFAM:SSF51197	EnsemblPlantsGene:Solyc12g013780.1	EnsemblPlants:Solyc12g013780.1.1
UniParc:UPI000276A4B8	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:4584783..4587211

Molecular Weight (calculated)

43316.0 Da

IEP (calculated)

6.382

GRAVY (calculated)

-0.431

Length

373 amino acids

Sequence
(BLAST)

001: MEHAIEEEHV KTLSMNENNK MQVKNFIWSK EEWPTLKHDD FGDVEDDIPV ISLNNRVRDN DDQQVYDNLC NVMVKASENW GFFKLVDHGV SSEIVENYIT
101: RLHELFDLPM EKKLKGGKTS SLPLGYYASN PEYGENLPWA EVLQLLQSPE MVVEFAKKVY GDQYHTFSNP MIEYMKEMDK LGMVIFKMLA HGLGLEDDFF
201: FSKNFEEKEA TYFRVSRYPP CPLPEKIVGI GIHSDPQTLT ILHQDQVGGL QVLKDDKQWI GVRPLPNSFV INIGDTLEAW TNGRLKSVIH RAVVNKEKQR
301: LSIAYFMSPT SNAIIECPPQ LIHPIYNPRK YLPFTWDQLR HLLLTTRRVR GKAIALNKFL ISSRDFQNSQ RFM

Best Arabidopsis Sequence Match ( AT1G44090.1 )
(BLAST)

001: MCIYASRQTV CPYLTPFKVK RPKSREMNSS DVNFSLLQSQ PNVPAEFFWP EKDVAPSEGD LDLPIIDLSG FLNGNEAETQ LAAKAVKKAC MAHGTFLVVN
101: HGFKSGLAEK ALEISSLFFG LSKDEKLRAY RIPGNISGYT AGHSQRFSSN LPWNETLTLA FKKGPPHVVE DFLTSRLGNH RQEIGQVFQE FCDAMNGLVM
201: DLMELLGISM GLKDRTYYRR FFEDGSGIFR CNYYPPCKQP EKALGVGPHN DPTAITVLLQ DDVVGLEVFA AGSWQTVRPR PGALVVNVGD TFMALSNGNY
301: RSCYHRAVVN KEKVRRSLVF FSCPREDKII VPPPELVEGE EASRKYPDFT WAQLQKFTQS GYRVDNTTLH NFSSWLVSNS DKKST

Arabidopsis Description

GA20OX5Gibberellin 20 oxidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q4PT02]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.