Factsheet for Solyc03g006880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400062314	Potato	cytosol	96.3	96.3
Solyc09g009110.2.1	Tomato	cytosol	80.16	80.16
Solyc11g072310.1.1	Tomato	cytosol	76.72	76.52
Solyc06g050110.1.1	Tomato	cytosol	73.28	76.31
Solyc06g035530.2.1	Tomato	cytosol	74.87	76.08
KRH38652	Soybean	cytosol	72.49	71.73
VIT_16s0022g02310.t01	Wine grape	cytosol	71.69	70.94
KRH09174	Soybean	cytosol	55.56	69.08
KRG91415	Soybean	cytosol	69.31	68.41
Solyc10g045690.1.1	Tomato	cytosol, nucleus, peroxisome	33.6	66.84
KRH35405	Soybean	cytosol	64.29	66.58
Solyc01g093980.2.1	Tomato	cytosol	63.49	65.93
GSMUA_Achr8P19120_001	Banana	cytosol, extracellular, peroxisome	52.38	64.29
TraesCS5D01G566200.1	Wheat	cytosol, peroxisome, plastid	61.38	64.27
HORVU5Hr1G124120.1	Barley	cytosol	60.85	63.89
TraesCS4A01G319100.1	Wheat	cytosol, peroxisome, plastid	61.38	63.56
TraesCS5B01G560300.1	Wheat	cytosol, peroxisome, plastid	61.64	63.49
GSMUA_Achr2P01010_001	Banana	cytosol, peroxisome, plastid	52.12	62.94
EER90481	Sorghum	cytosol	58.99	58.84
Os03t0856700-02	Rice	cytosol, mitochondrion	57.41	58.33
GSMUA_AchrUn_...	Banana	cytosol	47.88	56.04
Zm00001d034898_P001	Maize	plastid	59.79	55.94
Solyc10g046820.1.1	Tomato	cytosol, nucleus, peroxisome	28.84	55.33
Solyc09g042210.1.1	Tomato	cytosol, mitochondrion, nucleus, peroxisome	18.52	53.85
HORVU3Hr1G089980.2	Barley	cytosol	50.53	53.5
Solyc10g045770.1.1	Tomato	cytosol	15.08	52.29
TraesCS3D01G393900.1	Wheat	cytosol	49.21	52.25
TraesCS3A01G399800.1	Wheat	cytosol	49.47	52.23
TraesCS3D01G394000.1	Wheat	cytosol, peroxisome, plastid	49.21	51.81
TraesCS3B01G432800.1	Wheat	cytosol	48.94	51.39
Os07t0169700-01	Rice	plasma membrane	49.21	50.68
EER95912	Sorghum	cytosol	49.21	48.69
Solyc11g013360.1.1	Tomato	cytosol	44.18	48.41
Solyc09g018420.1.1	Tomato	cytosol	13.23	48.08
Zm00001d007894_P001	Maize	cytosol	49.47	47.46
Solyc01g108880.2.1	Tomato	cytosol, extracellular	27.78	30.0
Solyc01g108860.2.1	Tomato	cytosol	27.51	29.63
Solyc12g013780.1.1	Tomato	cytosol	28.57	28.95

Protein Annotations

MapMan:11.6.1.5	Gene3D:2.60.120.330	EMBL:AF049898	InterPro:DIOX_N	GO:GO:0000003	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006629	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009416	GO:GO:0009628	GO:GO:0009653
GO:GO:0009686	GO:GO:0009719	GO:GO:0009740	GO:GO:0009791	GO:GO:0009826	GO:GO:0009908
GO:GO:0009987	GO:GO:0016043	GO:GO:0016049	GO:GO:0016491	GO:GO:0040007	GO:GO:0045544
GO:GO:0046872	GO:GO:0055114	InterPro:IPNS-like	InterPro:IPR005123	InterPro:IPR027443	InterPro:Oxoglu/Fe-dep_dioxygenase
PFAM:PF03171	PFAM:PF14226	PRINTS:PR00682	PFscan:PS51471	PANTHER:PTHR10209	PANTHER:PTHR10209:SF140
UniProt:Q9ZPP4	SUPFAM:SSF51197	EnsemblPlantsGene:Solyc03g006880.2	EnsemblPlants:Solyc03g006880.2.1	UniParc:UPI00000A9528	:

Description

Gibberellin 20-oxidase-1 [Source:UniProtKB/TrEMBL;Acc:Q9ZPP4]

Coordinates

chr3:+:1408533..1410323

Molecular Weight (calculated)

43038.0 Da

IEP (calculated)

6.503

GRAVY (calculated)

-0.409

Length

378 amino acids

Sequence
(BLAST)

001: MAIDCMITNG KSPMLDEKKQ FIFDASHMKR ESNIPTQFIW PDHEKPCALV QQLHVPLIDL RGFLSGDPDA AQQASELVGE ACRGHGFFLV VNHGVDANLI
101: SNAHRYMDTF FELPLLEKQK AQRKIGEHCG YASSFTGRFS SKLPWKETLS FRYSAKKESS HIVEEYFQST LGESFNHLGN VYQEYCNSMN TLSLGIMELL
201: GMSLGVEKSH FKEFFEENDS IMRLNYYPPC QKPELALGTG PHCDPTSLTI LHQDCVGGLQ VFVDDEWRSI SPNFNAFVVN IGDTFMALSN GRYKSCLHRA
301: VVNNKTPRKS LAFFLCPNKD KVVSPPNELV DSNNPRIYPD FTWPTLLEFT QKHYRADMNT LQTFSNWLHD QHNTTTQA

Best Arabidopsis Sequence Match ( AT4G25420.1 )
(BLAST)

001: MAVSFVTTSP EEEDKPKLGL GNIQTPLIFN PSMLNLQANI PNQFIWPDDE KPSINVLELD VPLIDLQNLL SDPSSTLDAS RLISEACKKH GFFLVVNHGI
101: SEELISDAHE YTSRFFDMPL SEKQRVLRKS GESVGYASSF TGRFSTKLPW KETLSFRFCD DMSRSKSVQD YFCDALGHGF QPFGKVYQEY CEAMSSLSLK
201: IMELLGLSLG VKRDYFREFF EENDSIMRLN YYPPCIKPDL TLGTGPHCDP TSLTILHQDH VNGLQVFVEN QWRSIRPNPK AFVVNIGDTF MALSNDRYKS
301: CLHRAVVNSE SERKSLAFFL CPKKDRVVTP PRELLDSITS RRYPDFTWSM FLEFTQKHYR ADMNTLQAFS DWLTKPI

Arabidopsis Description

GA20OX1Gibberellin 20 oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39110]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.